PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000652.1_g710.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 281aa    MW: 31641.1 Da    PI: 9.1643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000652.1_g710.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12176222455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Pav_sc0000652.1_g710.1.mk 176 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVSYINQLK 222
                                799***********************6.....5*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MEEIISSSSP TNFCQEDSSI FQKRLQFILQ NRPEWWVYSI FWQASNDSND QVSLSWAGGD  60
FRINRDLATK SSNKVVNNYN PKFGFNNVER RKVGSCEDNA LVQLLENGMF SGAQKEMTRQ  120
GGTKEVAHIN ICDSSPDSPS DSVGNFTSEN TANTRSKKKR RSSSTNGTGR ASQLLNHVEA  180
ERQRREKLNH RFYVLRSVVP NVSKMDRSSL LADAVSYINQ LKAKVEELEA KVQEQPKNPK  240
VSNGSSLDHQ SSQSTDVVAR VPYGFTSEEA MRVSIIKSWC N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.11e-26bHLH family protein