PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000638.1_g510.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 827aa MW: 90860 Da PI: 8.0267

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000638.1_g510.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	404	424	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pav_sc0000638.1_g510.1.mk 404 PCPEFRK-GACRQGDACEYAHG 424 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence
ETKARVLESI EPLSFVDAFK NSKVRNNIKL RTDNLTPRLQ RQPRQTISRV HSSSPVMHSL 60 VTASQNSERT VMVRPRQPPK TKTRKADQGH AAIRYSKAFK EEELGFLSHS VFCSFYHFSV 120 VRKGEISMCS GSKRKPSSTD LIMEREKQEG MRYSFSILLE LSASDDLDGF KRAVEEEGHD 180 VDEASYWYGR LIGSKKMGFE ERTPLMIAAM FGSKNVLNYI LQTCLVDVNR ACGSDRATAL 240 HCAAAGGSSA SAEVVKLLLA TSADASSLDA NGNQAGDLIA PAYSSTFNSK KKALEVMLKG 300 VLSIDEPFDF SEQMVYETEG QEQQEITTPR ASKDGTEKKE YPIDLSLPDI KNGIYSTDEF 360 RMYTFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GACRQGDACE 420 YAHGIFECWL HPAQYRTRLC KDETGCTRRV CFFAHKPEEL RPLYASTGSA VPSPRSFSAN 480 ASSLDMGSIS PLSLNSPSML IPPAATPPMT PSGASSPRSG NMWQNQPNIA PPTLQLPGSR 540 LKSTLSARDM DLDIELFSLE SHRRRQQRLI DEISGSPSSW NTGLSSPSAF AASGNRTGEL 600 NRIGGVNPTN LDDIFGSLDP AILPQYNGPA SQLHSPTGIQ MRQNMNLQPR PSYSASLSSS 660 PVRASPLFGA DASSAAAVFS SRSAAFAKRS QSFIERSAGN RNPGFSSRAD SGTLMPSNIS 720 DWGSPGGKLD WGVQGEELNK LRKSASFGFR SSGSSFSNAP TMMPGTADEP DVSWVQSLVK 780 DAPPPSQRGQ FGFEDQQQPQ CHPNNGGPEM LPAWVEQLYL EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence

ETKARVLESI EPLSFVDAFK NSKVRNNIKL RTDNLTPRLQ RQPRQTISRV HSSSPVMHSL  60
VTASQNSERT VMVRPRQPPK TKTRKADQGH AAIRYSKAFK EEELGFLSHS VFCSFYHFSV  120
VRKGEISMCS GSKRKPSSTD LIMEREKQEG MRYSFSILLE LSASDDLDGF KRAVEEEGHD  180
VDEASYWYGR LIGSKKMGFE ERTPLMIAAM FGSKNVLNYI LQTCLVDVNR ACGSDRATAL  240
HCAAAGGSSA SAEVVKLLLA TSADASSLDA NGNQAGDLIA PAYSSTFNSK KKALEVMLKG  300
VLSIDEPFDF SEQMVYETEG QEQQEITTPR ASKDGTEKKE YPIDLSLPDI KNGIYSTDEF  360
RMYTFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GACRQGDACE  420
YAHGIFECWL HPAQYRTRLC KDETGCTRRV CFFAHKPEEL RPLYASTGSA VPSPRSFSAN  480
ASSLDMGSIS PLSLNSPSML IPPAATPPMT PSGASSPRSG NMWQNQPNIA PPTLQLPGSR  540
LKSTLSARDM DLDIELFSLE SHRRRQQRLI DEISGSPSSW NTGLSSPSAF AASGNRTGEL  600
NRIGGVNPTN LDDIFGSLDP AILPQYNGPA SQLHSPTGIQ MRQNMNLQPR PSYSASLSSS  660
PVRASPLFGA DASSAAAVFS SRSAAFAKRS QSFIERSAGN RNPGFSSRAD SGTLMPSNIS  720
DWGSPGGKLD WGVQGEELNK LRKSASFGFR SSGSSFSNAP TMMPGTADEP DVSWVQSLVK  780
DAPPPSQRGQ FGFEDQQQPQ CHPNNGGPEM LPAWVEQLYL EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein