PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000638.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 373aa MW: 41472.5 Da PI: 8.2957

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000638.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	132	155	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ +++L +H+ t H Pav_sc0000638.1_g070.1.mk 132 FPCTACGEIFPKPETLDNHQATrH 155 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MANISTLFHK FLSLFLLLLH LGCFTFTTNH KHPPTKKHKL SSLLSKPTLK PQKALTASWS 60 YLKRIFTSPR TCKITCTNII QSHLSTPPRS SHHSIVSLVQ PDPDSKYPSG SFPESDISAA 120 SHPFFPLRND IFPCTACGEI FPKPETLDNH QATRHAVSEL IDGDSGKNIV RIIFKTGWTD 180 TRKAPEIRRI LKIHNSEKIL SRFEEYREAV KCKAARNGAV RRRDERCIAD GNELLRFHCS 240 TFVCDLGLNG NSGICNREYC SVCGIIKSGF SPKLDGISTL SSSSRAHVAI PEDIEEEFEF 300 MNVKRAMLVC RVVAGRVGCD SEEDLHDVDK EGGGFDSVVG RGGSGAHTKV DEEELLVFNP 360 RAVLPCFVIV YTV

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MANISTLFHK FLSLFLLLLH LGCFTFTTNH KHPPTKKHKL SSLLSKPTLK PQKALTASWS  60
YLKRIFTSPR TCKITCTNII QSHLSTPPRS SHHSIVSLVQ PDPDSKYPSG SFPESDISAA  120
SHPFFPLRND IFPCTACGEI FPKPETLDNH QATRHAVSEL IDGDSGKNIV RIIFKTGWTD  180
TRKAPEIRRI LKIHNSEKIL SRFEEYREAV KCKAARNGAV RRRDERCIAD GNELLRFHCS  240
TFVCDLGLNG NSGICNREYC SVCGIIKSGF SPKLDGISTL SSSSRAHVAI PEDIEEEFEF  300
MNVKRAMLVC RVVAGRVGCD SEEDLHDVDK EGGGFDSVVG RGGSGAHTKV DEEELLVFNP  360
RAVLPCFVIV YTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-111	C2H2 family protein