PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000600.1_g540.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 145aa MW: 16422 Da PI: 4.3739 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.2 | 2.8e-19 | 2 | 67 | 35 | 100 |
DUF260 35 klFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++FGasnv++ll++lp ++r +a+++l eAear++dP+yG+v++i++lqqq+ l+a+la lk++ Pav_sc0000600.1_g540.1.mk 2 RIFGASNVSRLLATLPLSDRCEAATTLWHEAEARLQDPIYGCVSHIFALQQQVVDLQAQLAFLKDQ 67 89***********************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MRIFGASNVS RLLATLPLSD RCEAATTLWH EAEARLQDPI YGCVSHIFAL QQQVVDLQAQ 60 LAFLKDQAAQ SFVNGSAVAN PNQAAQSWFH ELENSSNYMP QFNSTHINNP GTTSYYENEI 120 RQWDEYNKQW GFQDADELQS VVSSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-23 | LBD family protein |