PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000589.1_g100.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 704aa    MW: 76321.2 Da    PI: 8.6803
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000589.1_g100.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.11.5e-30101185187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++
  Pav_sc0000589.1_g100.1.mk 101 RWPRQETLALLKIRSEMDVSFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSE 182
                                8*********************************************************************866665..****** PP

                   trihelix  85 lea 87 
                                lea
  Pav_sc0000589.1_g100.1.mk 183 LEA 185
                                985 PP
2trihelix107.31e-33493578187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++
  Pav_sc0000589.1_g100.1.mk 493 RWPKAEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHE 575
                                8*********************************************************************8.99999******* PP

                   trihelix  85 lea 87 
                                l+a
  Pav_sc0000589.1_g100.1.mk 576 LDA 578
                                *85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MQQGAGGAQT HYGVGAAEDM GAAAAGPSSS SMAAAAAEAG DQAQLVEAAS PISSRPPASA  60
SVNLDELMTL SGAAAAAEDA LAGSRDEADR GGGGVGSSGN RWPRQETLAL LKIRSEMDVS  120
FRDATLKGPL WEDVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF  180
SELEALHGTT AATSSVNMSA SPAVHVTHAS PNPVSIGFSN PMPISSFRMS PTIPVMPSQQ  240
PPATFPVMPS SQPPPTAATT ATPMDINFSS NSSSSSPGTD DEDDDDDVEG EPSSRKRKRG  300
GASTSTSGSG STRKMMEFFE VLMKQVMHKQ ETMQQRFLEV IEKREQDRTI REEAWKRQEM  360
ARLTREHELM NQERAISASR DAAIIAFLQK ITGQTIQLPP PINVHAAPPP PVPPSVPVVT  420
PLAQQSVQPP IQTSYHQTTP QQQHAQQVRH HQQQSQNLQV VMAVPEQQVQ PPQENISSGG  480
GAGGSLEPAS SSRWPKAEVL ALIKLRSGLE SRYQEAGPKG PLWEEISAGM GRMGYKRSSK  540
RCKEKWENIN KYFKKVKESN KKRPEDAKTC PYFHELDALY RKRILGGGGG GGSSSSLGNQ  600
NRPEQPQQQP LQLENPKSDS ATQPQDRSLQ AQPSVPVMSQ TQEAVVATDQ SENKNGDHSA  660
NVETSNMGLR ANLFGEATDE AAKKPEDIVK ELMQQQQKNQ KQLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152KRSAKKCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-56Trihelix family protein