PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000583.1_g650.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 265aa    MW: 29665.2 Da    PI: 4.9441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000583.1_g650.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd  lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
  Pav_sc0000583.1_g650.1.mk 14 KGPWTPEEDHVLVTYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                               79******************************99************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++ eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Pav_sc0000583.1_g650.1.mk  67 RGNFSREEEDAIINLHEVLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MVRAPCCEKM GLKKGPWTPE EDHVLVTYIQ QYGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SREEEDAIIN LHEVLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQNR  120
TTTSETRARF FSTKTEQEPE PSEKSESLDC GPASPPQCTS SDTSSATTSD NNSNIKSNND  180
KTCMEFDGYA ANLPEADESF WSEVLSAENF DQMVDQVQAI GGVPGVGVGP ADDGFCLDMY  240
DHNSMDFWLN ILPGADEIPE LLLGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-73MYB family protein