PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000583.1_g500.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 179aa MW: 21056.9 Da PI: 10.8967 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.5e-19 | 40 | 87 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 ++y+G+r+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ Pav_sc0000583.1_g500.1.mk 40 PRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAF 87 68********.**********98887..*********************96 PP | |||||||
2 | AP2 | 61.1 | 2.6e-19 | 117 | 169 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+G+r+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ ++g+ Pav_sc0000583.1_g500.1.mk 117 PRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 169 68********.**********98887..**********************988886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MSQPIFLPPN LNKDFLFLLN MEGKKVENQQ KEQTKVRDQP RYRGIRRRPW GKFAAEIRDP 60 SRNGARLWLG TFETAEEAAR AYDRAAFGFR DFLFLLNMEG KKVENQQKEQ TKVRDQPRYR 120 GIRRRPWGKF AAEIRDPSRN GARLWLGTFE TAEEAARAYD RAAFGFRGHL AILNFPNDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 9e-29 | ERF family protein |