PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000581.1_g040.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 531aa MW: 58750.4 Da PI: 7.0532

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000581.1_g040.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.9e-17	176	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pav_sc0000581.1_g040.1.mk 176 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 225 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MWDLNDSPDQ RPRGDESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVV EDDGSDEEED 60 NDGPAKLAKT RGGGRGKIFG FSMTHEESMD SDPPVTVTRQ FFPVELDSTS EIMGPTRGGV 120 PPPAPPPSSS SFPRAHWVGV NFGQSDSGSP GKPPAAVEAA HQPMKKSRRG PRSRSSQYRG 180 VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSIEDYEED 240 LKQMTNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK 300 CNGKEAVTNF DPSIYENELN PFSESSGVNA AEHNLDLSLG NSNSKKNNQA FGSSDHGQNA 360 AMEVQHSASM QLEADWRNQG FRQKLNLQRD RSREESDAHR RDGYLETEAM QLLLRTNLHS 420 PAPTEMHTYG QFSRRPNVGD TQMPHTFPPH FNSPNNYHLV QFPSSSEGGR IGSDLSLSMS 480 DHQHQQQWQS GTPTSDIFAT AAASSGFPPQ IRPSAQNCWL QKSGFHSLTR R

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MWDLNDSPDQ RPRGDESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVV EDDGSDEEED  60
NDGPAKLAKT RGGGRGKIFG FSMTHEESMD SDPPVTVTRQ FFPVELDSTS EIMGPTRGGV  120
PPPAPPPSSS SFPRAHWVGV NFGQSDSGSP GKPPAAVEAA HQPMKKSRRG PRSRSSQYRG  180
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSIEDYEED  240
LKQMTNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK  300
CNGKEAVTNF DPSIYENELN PFSESSGVNA AEHNLDLSLG NSNSKKNNQA FGSSDHGQNA  360
AMEVQHSASM QLEADWRNQG FRQKLNLQRD RSREESDAHR RDGYLETEAM QLLLRTNLHS  420
PAPTEMHTYG QFSRRPNVGD TQMPHTFPPH FNSPNNYHLV QFPSSSEGGR IGSDLSLSMS  480
DHQHQQQWQS GTPTSDIFAT AAASSGFPPQ IRPSAQNCWL QKSGFHSLTR R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-95	AP2 family protein