PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000580.1_g150.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 307aa    MW: 34809.7 Da    PI: 8.8072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000580.1_g150.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-082872345
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                WT+eE +++ +a +++ ++   +W ++a++++ g+t  +++  + 
  Pav_sc0000580.1_g150.1.mk 28 EWTAEENKQFENALALYDKDtpdRWFKVAARIP-GKTVGDVIKQYK 72
                               6********************************.****99988775 PP
2Myb_DNA-binding47.25.1e-15135179347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Pav_sc0000580.1_g150.1.mk 135 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                                8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MYRGIGILSP TSYLENSNWL FQESNGTEWT AEENKQFENA LALYDKDTPD RWFKVAARIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YTSNSFTLEW VNNQGFDGLK QFYGVGGKRG  120
TSTRPADQER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQLTGGKDK RRSSIHDITT VNLQDNKPPS PDSKSPPSSD HSSTVVQSQQ HQKVTGMSEQ  240
QFDWKSPNEG QPMVFNSANG STFMGPFCGI SSYVPKLEEQ NFLSGNLHGS QLGHYNARFQ  300
MQSMRYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-123MYB family protein