PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000578.1_g150.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 587aa MW: 67743.8 Da PI: 7.5704

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000578.1_g150.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.4e-21	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn YA ++GF +r s++++ + +ge+t++++vC k+g++ +++ + ++rr+r trtgCkakl++ k + ++k+ v +++ Pav_sc0000578.1_g150.1.br 31 NFYNMYAAKAGFGIRCSTTRTCTFTGEVTRKEYVCCKQGYALTSTVS--RKRRQRGCTRTGCKAKLVILKVNeKNKYTVVGFNE 112 6***************************************99888..9*************988877******* PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0000578.1_g150.1.br 113 VHNHDMT 119 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MECEGQVTPE VSSELKPKLG LEFDCCEDVF NFYNMYAAKA GFGIRCSTTR TCTFTGEVTR 60 KEYVCCKQGY ALTSTVSRKR RQRGCTRTGC KAKLVILKVN EKNKYTVVGF NEVHNHDMTT 120 VDKVHLLRSH RNLTESTKAY SAHMSKVNIP VHKQVSLLKV QVGGLENVGF VRRDVYNYAW 180 DVRGEVIGHD AELLKEHFLA EQGKNDSFYF NMEVDSEVNV FWADARSRRA YGFFGDVVVF 240 DTTFNTNCYG MLFEEFKKAI PGEPPKMIIT DQDAAMSKAI ALTLPTTFHR YCIWHILNKF 300 MEKPGIGECF SEMCKCIWGM DTKEEFDAKW DEIVTSNGLK DHPWLSSIHA LRENWVPSYV 360 KHVFLAGMSS SQRAESCHTF FKPYINRKNT LMEFIVRFER ALGSQRHKEL MADHVDTNEK 420 PSLPFRTPMQ HQMAHIYTRE ILEMFEREDV QSILCLFELV EQDETQCRYK VSERVNPGVT 480 RMKELVHDKD ADKAYCNCKG FEFWGIPCRH ILTFLRMKQV EQLPDNYIVK RWLQSAKCGV 540 VYDKNDKEVK DCVDGLVLVK RSKLGKVAGE LIDSALLCDE GFELLKN

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MECEGQVTPE VSSELKPKLG LEFDCCEDVF NFYNMYAAKA GFGIRCSTTR TCTFTGEVTR  60
KEYVCCKQGY ALTSTVSRKR RQRGCTRTGC KAKLVILKVN EKNKYTVVGF NEVHNHDMTT  120
VDKVHLLRSH RNLTESTKAY SAHMSKVNIP VHKQVSLLKV QVGGLENVGF VRRDVYNYAW  180
DVRGEVIGHD AELLKEHFLA EQGKNDSFYF NMEVDSEVNV FWADARSRRA YGFFGDVVVF  240
DTTFNTNCYG MLFEEFKKAI PGEPPKMIIT DQDAAMSKAI ALTLPTTFHR YCIWHILNKF  300
MEKPGIGECF SEMCKCIWGM DTKEEFDAKW DEIVTSNGLK DHPWLSSIHA LRENWVPSYV  360
KHVFLAGMSS SQRAESCHTF FKPYINRKNT LMEFIVRFER ALGSQRHKEL MADHVDTNEK  420
PSLPFRTPMQ HQMAHIYTRE ILEMFEREDV QSILCLFELV EQDETQCRYK VSERVNPGVT  480
RMKELVHDKD ADKAYCNCKG FEFWGIPCRH ILTFLRMKQV EQLPDNYIVK RWLQSAKCGV  540
VYDKNDKEVK DCVDGLVLVK RSKLGKVAGE LIDSALLCDE GFELLKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	82	SRKRRQ
2	78	104	RKRRQRGCTRTGCKAKLVILKVNEKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-85	FAR1 family protein