PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000563.1_g060.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 203aa    MW: 22780.1 Da    PI: 7.7692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000563.1_g060.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000122850123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ Fs+   L  H++ H
  Pav_sc0000563.1_g060.1.mk 28 YECTFCKRGFSNAQALGGHMNIH 50
                               99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MESDQAIQEN SEQVSDDKQG ASQAAKSYEC TFCKRGFSNA QALGGHMNIH RKDKAKLKQV  60
SSSNTIETKQ HQQQQQRLLD IPKMSSSYSS PILPTINSSE HNRLKPSHDA ERNTSPWPWF  120
LNKEGDATLR HDIDPNHLAQ VQQQLPLFSQ APSQARVHEN PGLRQAHGDQ GLQPSGSELD  180
LELRLGPERQ DSSSKANTTR KFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-16C2H2 family protein