PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000558.1_g830.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 442aa    MW: 48942.9 Da    PI: 9.8887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000558.1_g830.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.4e-11107148351
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                 +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Pav_sc0000558.1_g830.1.mk 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 148
                                79**98..47*********4.....5********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MVSLRRRRLL GLCSGVSPVL DPLPRLCDNG TVQTFTWTNP VSVHPMPSND ANQPDGNASV  60
KVEARSPTAS GSSLSKEQHD QQVAGPPIKR RKRHRRKHFQ NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGSQEEAA RLYDRAAFMC GREPNFELSE EEKQELRKFK WDEFLAMTRH  180
AITNKKHRRR PGAESHKRSD TPLENGDWDD KEEVDSLSAS EDMEQDMPTL GQMAKLKKSK  240
SNFIAFIIIM ASDDPKAIEA EPPSLSWKER IVFPTLLAGI VGGGAGLVSK HRKVVGLPTS  300
CASYAANFAI VTACYCGARE YVSVTRKTGP DDLVNSAIAG FGTGAILGRL QGGRIGAVRY  360
SIIFSVVGTT VDYATIKLRP VLKSYKESML GNNDGKNAGW LKMPDWSPIK VLDEEALAAK  420
QAREKQMYAQ RAALGNLSKE ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-45ERF family protein