PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000558.1_g260.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 581aa MW: 63155.2 Da PI: 7.0521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000558.1_g260.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	395	442	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Pav_sc0000558.1_g260.1.mk 395 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 442 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MENEFFLNAG IPPPLHFQQT SSMPAWRSSF STAMDIQAAA TADRNCSSEQ SPDCFFNPNW 60 DKSADQNIHF ESALSSMVSS PAASNSNISN ESFVIRELIG KLGNIGSSGE ISPHSQSLLG 120 IQANTYMGRN GNGNASTNTS CYSTPLNSPP KLSLPIMDHH LKKEKLPNLG KSMPLNSSVA 180 EFSADPGFAE RAAKFSCFGS RSFNGRTTQL GMNNNNSNSN NTELPYRSNA IMGNGKLPRV 240 SSSPALKALG SQTGLQEKMN SLLQDRNELP ISREESTFSE QNPNGETGLV ASNSMDLNSR 300 KRKSVSKGKA KEPPPISSPS PIATKGAALN DNSNAKRSKP NENNGNDQNG SVKAEEDAKG 360 STSSDEKQTK TGPKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG 420 CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLASVNTRLD FNMDALMSKE IFQQNNSLPQ 480 HPIFPLDSSA QAIYGHQRQQ NPALQNNISN GAVDPLDTSL CQSLGMQLPP LSGFSSEGIP 540 QFPAFGEDDL QTIVQMGYGQ NSNRETELDG SNQVSHMKIE L

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MENEFFLNAG IPPPLHFQQT SSMPAWRSSF STAMDIQAAA TADRNCSSEQ SPDCFFNPNW  60
DKSADQNIHF ESALSSMVSS PAASNSNISN ESFVIRELIG KLGNIGSSGE ISPHSQSLLG  120
IQANTYMGRN GNGNASTNTS CYSTPLNSPP KLSLPIMDHH LKKEKLPNLG KSMPLNSSVA  180
EFSADPGFAE RAAKFSCFGS RSFNGRTTQL GMNNNNSNSN NTELPYRSNA IMGNGKLPRV  240
SSSPALKALG SQTGLQEKMN SLLQDRNELP ISREESTFSE QNPNGETGLV ASNSMDLNSR  300
KRKSVSKGKA KEPPPISSPS PIATKGAALN DNSNAKRSKP NENNGNDQNG SVKAEEDAKG  360
STSSDEKQTK TGPKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG  420
CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLASVNTRLD FNMDALMSKE IFQQNNSLPQ  480
HPIFPLDSSA QAIYGHQRQQ NPALQNNISN GAVDPLDTSL CQSLGMQLPP LSGFSSEGIP  540
QFPAFGEDDL QTIVQMGYGQ NSNRETELDG SNQVSHMKIE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	304	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-113	bHLH family protein