PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000556.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 412aa MW: 44999.6 Da PI: 6.7992

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000556.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.1e-13	358	403	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq Pav_sc0000556.1_g080.1.mk 358 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 403 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MESDLQQHHH KPQQHMNSSL MRYRSAPSSY FANILDSDFC EPLFNRPSSP ESERIFARFL 60 TGEVGGNGGG GGGGTEETAS HHKVTTQTNN QQTQFMVPKV DNEAGVIQQQ QQQQQSHLNN 120 YSSVSQGFYQ SPSSKPPLPN QSLNSANEGA YSMGTSQLPS VKTGGVTNSN LIRHSSSPAG 180 LFSHMNIDVA GYAALRGMGN YGASNSTNEE ASFSSTSRLK NFSSGPPSTS GLMSPIAEIG 240 NKRMRSDNQD SRGFGDGSGN NYVTGFPIDS WDDSAMMSDD ITRSASFRED DIKAFTGLSP 300 SETQDVEAGN RPPTLLAHHL SLPKTSAEMA AIEKFMQFQD SVPCKIRAKR GCATHPRSIA 360 ERVRRTRISE RMRKLQELVP NMDKQTNTAD MLDLAVEYIK DLQTQVQNLN GS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MESDLQQHHH KPQQHMNSSL MRYRSAPSSY FANILDSDFC EPLFNRPSSP ESERIFARFL  60
TGEVGGNGGG GGGGTEETAS HHKVTTQTNN QQTQFMVPKV DNEAGVIQQQ QQQQQSHLNN  120
YSSVSQGFYQ SPSSKPPLPN QSLNSANEGA YSMGTSQLPS VKTGGVTNSN LIRHSSSPAG  180
LFSHMNIDVA GYAALRGMGN YGASNSTNEE ASFSSTSRLK NFSSGPPSTS GLMSPIAEIG  240
NKRMRSDNQD SRGFGDGSGN NYVTGFPIDS WDDSAMMSDD ITRSASFRED DIKAFTGLSP  300
SETQDVEAGN RPPTLLAHHL SLPKTSAEMA AIEKFMQFQD SVPCKIRAKR GCATHPRSIA  360
ERVRRTRISE RMRKLQELVP NMDKQTNTAD MLDLAVEYIK DLQTQVQNLN GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-61	bHLH family protein