PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000554.1_g1630.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 265aa    MW: 29726.8 Da    PI: 8.4431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000554.1_g1630.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.9e-051742131155
                                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  Pav_sc0000554.1_g1630.1.mk 174 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASIYIMLLQ 213
                                 7999**************99.....9***************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MRNALLPSVP SHLYNFGNNI DVQMSNWDTQ INMNRKLGFC MGSKAFESDN PNSRAGDDFS  60
LPLPLQSSSL LAYQPAYPSG AFRYHDGVSQ QPILLDKKIS APQFEADFQA IQNARKRPIQ  120
VDDPGGLVGD KTALNEWNQN KRSKMTNSQQ QWHQQFQETS MQQQNNKMML APVRRSQKLS  180
DKITALQKLV SPYGKTDTAS VLQEASIYIM LLQEQIQECG IQPVLDLRSK GLCLVPVSVT  240
QKVTMEEGVD DAATSRKMVI ANNLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-19bHLH family protein