PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000549.1_g1010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 292aa    MW: 34109.4 Da    PI: 6.9553
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000549.1_g1010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.61.7e-092167153
                         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                                s++kGV+  k +g W A+I   +      k ++lg +  +eeAa a+++a+ kl
  Pav_sc0000549.1_g1010.1.mk 21 SRFKGVSLLK-SGNWGARISYmY------KPYWLGAYQMEEEAAIAYDRAAVKL 67
                                789*****99.7******87733......**********************988 PP
2B365.76.9e-21140234186
                                 EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                 f+k+lt+ dv+ ++ + +p++f  ++          g+++++ ++lt++d+++rsW++ ++y+++ + +++t+GW +F + n+
  Pav_sc0000549.1_g1010.1.mk 140 FQKELTHRDVTHKC-FLIPREFSFQYlplpegiinaGEDEARYVKLTFYDKHSRSWTFGYSYWQSTRNFMFTNGWGHFIRMNN 221
                                 99**********99.9******9999**********99999****************************************** PP

                                 --TT-EEEEEE-S CS
                          B3  74 LkegDfvvFkldg 86 
                                 L+++D+v+F++ +
  Pav_sc0000549.1_g1010.1.mk 222 LNQKDIVMFYRCE 234
                                 **********543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEAEFVSESR VDMVLQRGPS SRFKGVSLLK SGNWGARISY MYKPYWLGAY QMEEEAAIAY  60
DRAAVKLQRG DTPLNFHWSK YSAEESIFQS QYSTEEILSM LKDKTYSSKL MNFLSSHSSG  120
LGTQTTTFMN EQGISYHLLF QKELTHRDVT HKCFLIPREF SFQYLPLPEG IINAGEDEAR  180
YVKLTFYDKH SRSWTFGYSY WQSTRNFMFT NGWGHFIRMN NLNQKDIVMF YRCEYEGEVL  240
GREVYMIDYQ RRNGENYVLE HSSGSSTIEL EADCKQKETK KGFKLFGVEI SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-48RAV family protein