PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000522.1_g100.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1482aa MW: 165401 Da PI: 8.5396

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000522.1_g100.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	1391	1413	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H Pav_sc0000522.1_g100.1.mk 1391 CPvkGCGKKFFSHKYLVQHRRVH 1413 9999*****************99 PP
2	zf-C2H2	11.8	0.00072	1449	1475	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H Pav_sc0000522.1_g100.1.mk 1449 YVCAepGCGQTFRFVSDFSRHKRKtgH 1475 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1482 aa Download sequence
MSASGLAAEP NQEVFSWLKT LPVAPEYHPT WAEFQDPIAY IFKIEKEASK YGICKIVPPV 60 PPSPKKTAIA NLNRSLAARA GPSGASGTKS QPTFTTRQQQ IGFCPRKPRP VNRPVWQSGE 120 YYTFQQFEAK AKSFEKTYLR KCNKKGGLSP LDIETLYWKA TVDKPFSVEY ANDMPGSAFV 180 PVSARKSSTS RDAGDNVTLG ETAWNMRGVS RSKGSLLRFM KEEIPGVTSP MVYIAMLFSW 240 FAWHVEDHDL HSLNYLHMGA GKTWYGVPRE AAVAFEEVVR VQGYAGEINP LVTFSTLGQK 300 TTVMSPEVFI SSGIPCCRLV QNAGEFVVTF PRAYHTGFSH GFNCGEAANI ATPEWLRVAK 360 DAAIRRASIN YPPMVSHFQL LYDLALALCS RMPARICAEP RSSRLKDKRK GEGEAVVKEL 420 FVQNVIQNND LLHVLGKGSS IVLLPQSSSD LSFCSKLRVG SHLRVNPGFA NGLYDQREEM 480 KSSGSDSDGL MIDRQQVKGG YSVKGKLASL CESNRLPSLS GHNDAHALNS KRLNMNIERE 540 SNVEGEGLSD QRLFSCVTCG ILSFACVAII QPTEAAARYL MSADRSFFSD WVVGSGLAGE 600 VFQVANEDPI TSKNDPCTGL VENNAPAGLY DVPVQSADYQ IQRRDQSNKP VSNTEMQRDT 660 SALGLLALNY GNSSDSEEDQ LAPDVPVCCD ETNTTNCSFE SRYDYQSASP SPLRDSFGGT 720 TEAHSPPSPG FDCGNELPLQ SPDHYARDGR KIANFKDSSY QNFDFSADFK NNSASTKTNG 780 LVGTSMDPMK LSHSCSTDAH GPQTTELSKV TLPIETTNTA FPPGCDEDSS RMHVFCLEHA 840 IEVEQQLRSI GGVHIFLLCH PDYPRIEDEA KLMAEELGIS YLWNETTFKD ATEEDEKRIQ 900 SALDSEEAIA GNGDWAVKLG INLFYSASLS RSHLYSKQMA YNSVIYNAFG RSSPASSPTR 960 IDVYGRRSSK QKKVVAGKWC GKVWMSNQVH PYLAKRDPEE EEEVVEEEHR SFHAWAMPDE 1020 KLEGQPESTR KTENTLVTKK YARKRKMTAE TGTTKKVKCL EKEDAVSDYS VDDNSHQQQR 1080 RFPKSKQAEY VESGPTKKPK FVETEFTLSD DSMQDDSHQP DGRNFRCEQA NYIEGNDVSD 1140 DSVGVESHQR HRSAKSKQAK HMERDVVSDD SVEGSSRQQH GRVLRSKTAK GETDNFHKAS 1200 SHQERGSISK SKKARFIERE DAAVGETDNF LQQHKRILRS KQTQQETLQK MRRETPRQVK 1260 QGTAPLVKQG TRTLRKEQTA QQMKQQTPRL RNNQSEQNNF DLYADEGAEG GPSTRLRKRA 1320 PKPIKVAGTK PKEQQQTARK KAKNVSAVKA QAGQHDAKLR EEEAEFSCDI DGCTMSLGSK 1380 QELALHKRNI CPVKGCGKKF FSHKYLVQHR RVHTDDRPLR CPWKGCKMTF KWAWARTEHI 1440 RVHTGARPYV CAEPGCGQTF RFVSDFSRHK RKTGHSAKKS RG

Sequence ? help Back to Top

Protein Sequence Length: 1482 aa Download sequence

MSASGLAAEP NQEVFSWLKT LPVAPEYHPT WAEFQDPIAY IFKIEKEASK YGICKIVPPV  60
PPSPKKTAIA NLNRSLAARA GPSGASGTKS QPTFTTRQQQ IGFCPRKPRP VNRPVWQSGE  120
YYTFQQFEAK AKSFEKTYLR KCNKKGGLSP LDIETLYWKA TVDKPFSVEY ANDMPGSAFV  180
PVSARKSSTS RDAGDNVTLG ETAWNMRGVS RSKGSLLRFM KEEIPGVTSP MVYIAMLFSW  240
FAWHVEDHDL HSLNYLHMGA GKTWYGVPRE AAVAFEEVVR VQGYAGEINP LVTFSTLGQK  300
TTVMSPEVFI SSGIPCCRLV QNAGEFVVTF PRAYHTGFSH GFNCGEAANI ATPEWLRVAK  360
DAAIRRASIN YPPMVSHFQL LYDLALALCS RMPARICAEP RSSRLKDKRK GEGEAVVKEL  420
FVQNVIQNND LLHVLGKGSS IVLLPQSSSD LSFCSKLRVG SHLRVNPGFA NGLYDQREEM  480
KSSGSDSDGL MIDRQQVKGG YSVKGKLASL CESNRLPSLS GHNDAHALNS KRLNMNIERE  540
SNVEGEGLSD QRLFSCVTCG ILSFACVAII QPTEAAARYL MSADRSFFSD WVVGSGLAGE  600
VFQVANEDPI TSKNDPCTGL VENNAPAGLY DVPVQSADYQ IQRRDQSNKP VSNTEMQRDT  660
SALGLLALNY GNSSDSEEDQ LAPDVPVCCD ETNTTNCSFE SRYDYQSASP SPLRDSFGGT  720
TEAHSPPSPG FDCGNELPLQ SPDHYARDGR KIANFKDSSY QNFDFSADFK NNSASTKTNG  780
LVGTSMDPMK LSHSCSTDAH GPQTTELSKV TLPIETTNTA FPPGCDEDSS RMHVFCLEHA  840
IEVEQQLRSI GGVHIFLLCH PDYPRIEDEA KLMAEELGIS YLWNETTFKD ATEEDEKRIQ  900
SALDSEEAIA GNGDWAVKLG INLFYSASLS RSHLYSKQMA YNSVIYNAFG RSSPASSPTR  960
IDVYGRRSSK QKKVVAGKWC GKVWMSNQVH PYLAKRDPEE EEEVVEEEHR SFHAWAMPDE  1020
KLEGQPESTR KTENTLVTKK YARKRKMTAE TGTTKKVKCL EKEDAVSDYS VDDNSHQQQR  1080
RFPKSKQAEY VESGPTKKPK FVETEFTLSD DSMQDDSHQP DGRNFRCEQA NYIEGNDVSD  1140
DSVGVESHQR HRSAKSKQAK HMERDVVSDD SVEGSSRQQH GRVLRSKTAK GETDNFHKAS  1200
SHQERGSISK SKKARFIERE DAAVGETDNF LQQHKRILRS KQTQQETLQK MRRETPRQVK  1260
QGTAPLVKQG TRTLRKEQTA QQMKQQTPRL RNNQSEQNNF DLYADEGAEG GPSTRLRKRA  1320
PKPIKVAGTK PKEQQQTARK KAKNVSAVKA QAGQHDAKLR EEEAEFSCDI DGCTMSLGSK  1380
QELALHKRNI CPVKGCGKKF FSHKYLVQHR RVHTDDRPLR CPWKGCKMTF KWAWARTEHI  1440
RVHTGARPYV CAEPGCGQTF RFVSDFSRHK RKTGHSAKKS RG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein