PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000496.1_g340.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 277aa    MW: 30341.2 Da    PI: 4.4031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000496.1_g340.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056082123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C+k+Fs+   L  H++ H
  Pav_sc0000496.1_g340.1.mk 60 YSCTSCDKVFSTTQALGGHQNAH 82
                               99******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MFNPYMSSAQ SSSTTPNLPI TSNTPITPST DPIPIRFPMS PVLGACFSFH TIQSGDSSKY  60
SCTSCDKVFS TTQALGGHQN AHRKERNALF ASEQQRAAEE NDRDRDVVLS PDPIRWAYPA  120
SYYYFDAEII TTTTTTDVNT NNNNNNNNKM CEYEFFHFMG MAGDCNPKQA GFRFGSSSGG  180
GHGGVSGSGT KRPPEGDGDG AVQKKKAKYY EEDDDLKVVM PSVNLSLATR CGCDDLIDEI  240
EGSDSDLEWE DGEYMYFYQG GGASTSKTEE LDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-08C2H2 family protein