PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000465.1_g950.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 702aa MW: 76938.8 Da PI: 6.1456

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000465.1_g950.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	303	323	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ GtCk+Gd C +aHg Pav_sc0000465.1_g950.1.mk 303 PCLDYRK-GTCKRGDLCEYAHG 323 6999*.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI 60 SEASIVNEIG LWYGRDRASR RMVLEHRTPL MVASKYGSVD VVKLILSLSE ADVNCSPCGD 120 KSTALHCAAS GVSENAVDTV KILLLAGADP NAIDANGCCP FDVIVAPLNC SNLKVVLQEL 180 LQYDGSACQL DLHVSNVCFR SSSPSLSSSL KNASLPSSIP DSTCNSDDIH VSSAPEKKEY 240 PVNPSLPNIK NSIYATDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS 300 CMPCLDYRKG TCKRGDLCEY AHGVFECWLH PAQYKTRLCK DGMSCLRQVC FFAHKPEEMR 360 PVYVSTGSAM PSPHSATSAA AFMDMAAALN LLPGSPKAVQ AMLLSPFSPP ISPGNGISDS 420 CMAWPQKNIP SLHLPESNLR ASRLRSSLNA KDIPTEEVNL LHNFELQQQQ PLHDVSSFSQ 480 SYINTSSVSR PLHPETLTPS NLNELFSAQV SSPRFTDHLV NSYAFSPSNK PAVCNQLQQQ 540 QTILSPIRTN AFSPRTFEQN LLQASFDFSS PRMMSYRSIE PLSPIGSRVS ALAQHEKQKL 600 QQLYSFSARD VGSNLPHELG SNGAVGSPVP SLSKWESANG KLDWSVQTDE LGHLTKFCSG 660 EHNVEEPDVS WVQSLVKESP YDVKEVASAP ESGTLLSIDC SN

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI  60
SEASIVNEIG LWYGRDRASR RMVLEHRTPL MVASKYGSVD VVKLILSLSE ADVNCSPCGD  120
KSTALHCAAS GVSENAVDTV KILLLAGADP NAIDANGCCP FDVIVAPLNC SNLKVVLQEL  180
LQYDGSACQL DLHVSNVCFR SSSPSLSSSL KNASLPSSIP DSTCNSDDIH VSSAPEKKEY  240
PVNPSLPNIK NSIYATDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
CMPCLDYRKG TCKRGDLCEY AHGVFECWLH PAQYKTRLCK DGMSCLRQVC FFAHKPEEMR  360
PVYVSTGSAM PSPHSATSAA AFMDMAAALN LLPGSPKAVQ AMLLSPFSPP ISPGNGISDS  420
CMAWPQKNIP SLHLPESNLR ASRLRSSLNA KDIPTEEVNL LHNFELQQQQ PLHDVSSFSQ  480
SYINTSSVSR PLHPETLTPS NLNELFSAQV SSPRFTDHLV NSYAFSPSNK PAVCNQLQQQ  540
QTILSPIRTN AFSPRTFEQN LLQASFDFSS PRMMSYRSIE PLSPIGSRVS ALAQHEKQKL  600
QQLYSFSARD VGSNLPHELG SNGAVGSPVP SLSKWESANG KLDWSVQTDE LGHLTKFCSG  660
EHNVEEPDVS WVQSLVKESP YDVKEVASAP ESGTLLSIDC SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein