PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000405.1_g390.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GeBP

Protein Properties

Length: 454aa MW: 49960.2 Da PI: 4.5233

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000405.1_g390.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	102.5	3.6e-32	222	312	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 rlwse+Dei++L+G+i+++ k+g + + af+ef+kk+++++vsk ql++KirrLK K++kk ++ g++p+fsk+h+ k Pav_sc0000405.1_g390.1.mk 222 GRLWSEDDEIAILKGMIEYQVKNGPVTNSTMGAFHEFIKKKLQVDVSKLQLSDKIRRLKMKYQKKGEN---GEDPVFSKPHEVK 302 59********************99999******************************99999...********* PP DUF573 88 ifelskkiWg 97 +f+lskk+W+ Pav_sc0000405.1_g390.1.mk 303 SFDLSKKVWD 312 *******7 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAPKKLLDDP PVVEDSDDET VDEETVDEEE LEEEDDAVEA EDGKAKSGDD NHDGDEEEGE 60 EDADEEDEDE EDNEEKKEKP SSKKPLLTSS SAVSNSNPQW PSASEDDSGS GSETESEKNS 120 QSPSASDFTI NPIVSKPMND RIRVGNGPMN DPVKPNKKNA PAKPAPASNS GSKRLETEPN 180 KKNAPSSSNS VSKRRAETEP NPKDSKKKKV VNSGDDDDGK KGRLWSEDDE IAILKGMIEY 240 QVKNGPVTNS TMGAFHEFIK KKLQVDVSKL QLSDKIRRLK MKYQKKGENG EDPVFSKPHE 300 VKSFDLSKKV WDVEANGVDD NAKDSKRKPR KSNKVDKATV LALPVSDVAP VSDVAEKKEE 360 LNVANGGIKA DPVDFWSKYP CLSGSLGLDN STPRSDLTTL MIQKMPLIGK SKAKELEGKW 420 RALQLIEMEL SVKKLALMQE QAKFVLDSMK SSED

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAPKKLLDDP PVVEDSDDET VDEETVDEEE LEEEDDAVEA EDGKAKSGDD NHDGDEEEGE  60
EDADEEDEDE EDNEEKKEKP SSKKPLLTSS SAVSNSNPQW PSASEDDSGS GSETESEKNS  120
QSPSASDFTI NPIVSKPMND RIRVGNGPMN DPVKPNKKNA PAKPAPASNS GSKRLETEPN  180
KKNAPSSSNS VSKRRAETEP NPKDSKKKKV VNSGDDDDGK KGRLWSEDDE IAILKGMIEY  240
QVKNGPVTNS TMGAFHEFIK KKLQVDVSKL QLSDKIRRLK MKYQKKGENG EDPVFSKPHE  300
VKSFDLSKKV WDVEANGVDD NAKDSKRKPR KSNKVDKATV LALPVSDVAP VSDVAEKKEE  360
LNVANGGIKA DPVDFWSKYP CLSGSLGLDN STPRSDLTTL MIQKMPLIGK SKAKELEGKW  420
RALQLIEMEL SVKKLALMQE QAKFVLDSMK SSED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	209	KRRAETEPNPKDSKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-24	GeBP family protein