PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000405.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 372aa    MW: 41520.1 Da    PI: 6.8573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000405.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-07731127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                               +kt+lC  ++r G C + ++C+FaHg+
  Pav_sc0000405.1_g080.1.mk  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                               69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGRQDSGGD DLRDKLDRRY  60
SPRRSFEYSF GNSKRRKKQH LDGQSDISGS LRISNETEHE AKEANSRGFR EEQVQLKQLQ  120
SEINMLDHRR SQLGDLLQSE EVCKSTFSSQ VRLNKLGDQL ALDIYGIDVN EEDSSINIVS  180
DGDGETTGFP VTPHNERLND ASPSKIRLEA IRDYAKESKQ SAHSTRGHLT TSSRPKKLSR  240
WNIHPAQSNF DKKNEAVNNA IGSPKQLANE GKHDRRKTAS SSILSADMLK ISESAPVVPS  300
TSMAAHPVDT EVEIEPEDKI EMVGKASGKI EEGAAYKNMS FSLPLPPPPP IPKNNCSQYE  360
GDDEIIDVQG AD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-14C3H family protein