PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000399.1_g140.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 643aa MW: 74761.2 Da PI: 9.6683

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000399.1_g140.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.6e-21	42	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+YA +GF +r ++s + + ++ei +++fvC k+g ++++++ +++r+r +r++Ckak++v k++ ++k+ ++ + + Pav_sc0000399.1_g140.1.br 42 NFYNRYAFLAGFGIRLHSSFRGTYKKEILRKEFVCCKQGAYRKDETR--ERKRQRGISRCNCKAKIVVVKTNgSKKYAISLFAE 123 6************************************99998877..9999*********9999998******* PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0000399.1_g140.1.br 124 GHNHKMT 130 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MSGGSESDDC VTANGMVYIP EVRNEETPTV GMKFDSLDLA YNFYNRYAFL AGFGIRLHSS 60 FRGTYKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCN CKAKIVVVKT NGSKKYAISL 120 FAEGHNHKMT DSERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQKVSIFE VQSGGMDKIG 180 FIKKDIYNLE CSVNGKLRNH DVELVTEYFM AEQKKNEAFY FKIEGDGEDK FSRCFWADAT 240 SRRAYRLYGD VVVFDTTFNT NRYDLTFAPI LGVNNHGQKI VLACTFLSKE TTESFIWMFE 300 EFKKAMQGGE PKTIITDQDA AITRAISIAF PTTFHRLCIW HITSKFHVKL PHSAYKEYWR 360 EFQKAIWDTD NKDEFDAKWN IVVTKAGFTD HQWLSSMFDL RESWVPAYAQ DFFAAGMSSS 420 QRAEGSHAFF KQYISRRNSL MDFIIRFERA LSHQRQKELA ADHVDAFEVA QCILPMPMNK 480 QMATLYTRAM FQKFEKELIQ RTACFLELKT EDASKVVFNN DHFVGSFESE RVLGFWKERH 540 LQLGDEIQRA RARLEFVEGQ IEDDKRQANL DRAKLQRMKH RHKRLQSVAI QKYKNSSNAV 600 LSKKRVMQAG FDYFRSYAKL VVPGFDWSSI TFSDVNKYTH QGK

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MSGGSESDDC VTANGMVYIP EVRNEETPTV GMKFDSLDLA YNFYNRYAFL AGFGIRLHSS  60
FRGTYKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCN CKAKIVVVKT NGSKKYAISL  120
FAEGHNHKMT DSERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQKVSIFE VQSGGMDKIG  180
FIKKDIYNLE CSVNGKLRNH DVELVTEYFM AEQKKNEAFY FKIEGDGEDK FSRCFWADAT  240
SRRAYRLYGD VVVFDTTFNT NRYDLTFAPI LGVNNHGQKI VLACTFLSKE TTESFIWMFE  300
EFKKAMQGGE PKTIITDQDA AITRAISIAF PTTFHRLCIW HITSKFHVKL PHSAYKEYWR  360
EFQKAIWDTD NKDEFDAKWN IVVTKAGFTD HQWLSSMFDL RESWVPAYAQ DFFAAGMSSS  420
QRAEGSHAFF KQYISRRNSL MDFIIRFERA LSHQRQKELA ADHVDAFEVA QCILPMPMNK  480
QMATLYTRAM FQKFEKELIQ RTACFLELKT EDASKVVFNN DHFVGSFESE RVLGFWKERH  540
LQLGDEIQRA RARLEFVEGQ IEDDKRQANL DRAKLQRMKH RHKRLQSVAI QKYKNSSNAV  600
LSKKRVMQAG FDYFRSYAKL VVPGFDWSSI TFSDVNKYTH QGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-98	FAR1 family protein