PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000396.1_g520.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1225aa MW: 136955 Da PI: 5.5928

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000396.1_g520.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	272	317	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pav_sc0000396.1_g520.1.mk 272 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 317 78***************************.**********986 PP
2	Myb_DNA-binding	32.4	2.1e-10	324	367	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Pav_sc0000396.1_g520.1.mk 324 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 367 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1225 aa Download sequence
MALAISHAFH CPKLQFSQRN FRPKVPELRF QPSFFRTIPQ NTRIICAAAS AAGSSNPDSD 60 LNPYEVLGVS PIAGFDMIKA AYTKKHKEAV RSGDEATAAR LEKAYDKVMM AQLSNRKKGV 120 TFGSFKVSKD IKYADKQPIV PWGPRFTKST VQDMRINLAI SAVFIAWLLI KRNAEYKPLQ 180 FLTFAFVYRI FEKLKSFEPP VSPTYTEDGE DAGRGLQMGK RLLRSLALVF GCIAVASLGY 240 TGLLNLIEFT GSFIPAALYN NQVKMRIMIK GGVWKNTEDE ILKAAVMKYG KNQWARISSL 300 LVRKSAKQCK ARWYEWLDPS IKKTEWTREE DEKLLHLAKL MPTQWRTIAP IVGRTPSQCL 360 ERYEKLLDAA CVKDDNYEPG DDPRKLRPGE IDPNPESKPA RPDPVDMDED EKEMLSEARA 420 RLANTRGKKA KRKAREKQLE EARRLASLQK RRELKAAGID TRQRKRKRKG IDYNAEIPFE 480 KKPPPGFYDV ADEDRPVEQP QFPTTIEELE GKRRIDVEAQ LRKQDIAKNK IAQRQDAPSA 540 ILQANKLNDP ETVRKRSKLM LPAPQISDHE LEEIAKMGYA SDLAGSEELT EGSGATRALL 600 ANYSQTPRLG MTPQRTPQRT PSGKGDTIMM EAENLARLRE SQTPLLGGDN PELHPSDFSG 660 VTPRKKEIQT PNLMLTPSAT PGGAGLTPRI GMTPTRDSFG MTPKGTPIRD ELRINEEIDI 720 HDSAKLEQRR NLQFGLGNLP QPKNEYQIVM QPVPEDNEEP EEKIEEDMSD RLARERAEEE 780 ARQQALLRKR SKVLQRELPR PPAASLEFIR NSLTRADGDK SSFVPPTSVE QADEMVKKEL 840 LSVLEHDNAK YPLTEKVDKR KKKGAKRSAG GPSASVPVIE DFEEDEMTEN EFENVKKKME 900 DDIQKAASIE SKVKVRTYGY EMRAKDGLWP KIEETFKQMD TAAKELECFK ALQKQEKLAA 960 SHRINNIWEE VQKQKELERN LQKRYGDLVV ELERVQHRMD EYRAQAEKQE EIAAMNCDQE 1020 LAEATENVTV LQATENPDPI TASDELRSTV PGGASNGEAT NLQMDGDKDI DAGKVHETVS 1080 RDVNLPDNMP SAVEGENDPN SQLTNSGVIY SSGVAAQDSV SIGDNVSDSS GVAAQDSVSI 1140 GDNVSDNLVA TENKMVNDPD DGVISDNMTR SVVAEDQKVE MRQNLTELEG SVQAAGDGGF 1200 ANGSTTIVSV EGEVENSAEN AATQI

Sequence ? help Back to Top

Protein Sequence Length: 1225 aa Download sequence

MALAISHAFH CPKLQFSQRN FRPKVPELRF QPSFFRTIPQ NTRIICAAAS AAGSSNPDSD  60
LNPYEVLGVS PIAGFDMIKA AYTKKHKEAV RSGDEATAAR LEKAYDKVMM AQLSNRKKGV  120
TFGSFKVSKD IKYADKQPIV PWGPRFTKST VQDMRINLAI SAVFIAWLLI KRNAEYKPLQ  180
FLTFAFVYRI FEKLKSFEPP VSPTYTEDGE DAGRGLQMGK RLLRSLALVF GCIAVASLGY  240
TGLLNLIEFT GSFIPAALYN NQVKMRIMIK GGVWKNTEDE ILKAAVMKYG KNQWARISSL  300
LVRKSAKQCK ARWYEWLDPS IKKTEWTREE DEKLLHLAKL MPTQWRTIAP IVGRTPSQCL  360
ERYEKLLDAA CVKDDNYEPG DDPRKLRPGE IDPNPESKPA RPDPVDMDED EKEMLSEARA  420
RLANTRGKKA KRKAREKQLE EARRLASLQK RRELKAAGID TRQRKRKRKG IDYNAEIPFE  480
KKPPPGFYDV ADEDRPVEQP QFPTTIEELE GKRRIDVEAQ LRKQDIAKNK IAQRQDAPSA  540
ILQANKLNDP ETVRKRSKLM LPAPQISDHE LEEIAKMGYA SDLAGSEELT EGSGATRALL  600
ANYSQTPRLG MTPQRTPQRT PSGKGDTIMM EAENLARLRE SQTPLLGGDN PELHPSDFSG  660
VTPRKKEIQT PNLMLTPSAT PGGAGLTPRI GMTPTRDSFG MTPKGTPIRD ELRINEEIDI  720
HDSAKLEQRR NLQFGLGNLP QPKNEYQIVM QPVPEDNEEP EEKIEEDMSD RLARERAEEE  780
ARQQALLRKR SKVLQRELPR PPAASLEFIR NSLTRADGDK SSFVPPTSVE QADEMVKKEL  840
LSVLEHDNAK YPLTEKVDKR KKKGAKRSAG GPSASVPVIE DFEEDEMTEN EFENVKKKME  900
DDIQKAASIE SKVKVRTYGY EMRAKDGLWP KIEETFKQMD TAAKELECFK ALQKQEKLAA  960
SHRINNIWEE VQKQKELERN LQKRYGDLVV ELERVQHRMD EYRAQAEKQE EIAAMNCDQE  1020
LAEATENVTV LQATENPDPI TASDELRSTV PGGASNGEAT NLQMDGDKDI DAGKVHETVS  1080
RDVNLPDNMP SAVEGENDPN SQLTNSGVIY SSGVAAQDSV SIGDNVSDSS GVAAQDSVSI  1140
GDNVSDNLVA TENKMVNDPD DGVISDNMTR SVVAEDQKVE MRQNLTELEG SVQAAGDGGF  1200
ANGSTTIVSV EGEVENSAEN AATQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	450	469	KRRELKAAGIDTRQRKRKRK
2	464	469	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein