PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000395.1_g290.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 527aa MW: 56967.7 Da PI: 6.7445

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000395.1_g290.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.9	1.3e-18	147	233	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W+++ + +L++a++++ ++l+rg+l++ +Weev++ + r ++s qCk+k +nl+kryk ++++++++ s s++p+f Pav_sc0000395.1_g290.1.mk 147 EWSDSAISCLLDAYTDKFTQLNRGNLRGRDWEEVAAIVseRCDRQRKSVDQCKNKVDNLKKRYKLERQRMNNG-GVSASHWPWF 229 5***********************************544456677******************9998.566679 PP trihelix 83 dqle 86 +++e Pav_sc0000395.1_g290.1.mk 230 KKME 233 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MASCDDDFSI LGDESNPTHH SHLPHAPASH QLHQPYAPPH SFATRTTPVH APPAQPILSD 60 KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVVG ASEKRKDHSD ELSDGGGGGS 120 GSAPYSYKRS KPSSAAAIGE YRKDREEWSD SAISCLLDAY TDKFTQLNRG NLRGRDWEEV 180 AAIVSERCDR QRKSVDQCKN KVDNLKKRYK LERQRMNNGG VSASHWPWFK KMENIVGNSL 240 PGKAVSDEDK GVSSPGTTPR QSKSRNAMAI ISPVSQMNKV KSAPSIKWRR VVFKISGAAL 300 AGTAPNNVDS KLAMLIAREV ALACHNGVEV AIVVGGRNFF CGDAWVTATG LDRSTAYQIG 360 MMATVMNSVL LQSALEKMGV QTRVQTAFSM QEVAEPYSRQ RAIRHLEKGR VVIFAGIGAG 420 TGNPLFSTDT AAALRALEIH AEAVLKGTNV DGVYDCNSQD NNFTFEHISF RDVVTRGATS 480 MDSMALTFCE ENRIPVVVFN LLEPGNISKA LCGEQVGTLI DQAGRIS

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MASCDDDFSI LGDESNPTHH SHLPHAPASH QLHQPYAPPH SFATRTTPVH APPAQPILSD  60
KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVVG ASEKRKDHSD ELSDGGGGGS  120
GSAPYSYKRS KPSSAAAIGE YRKDREEWSD SAISCLLDAY TDKFTQLNRG NLRGRDWEEV  180
AAIVSERCDR QRKSVDQCKN KVDNLKKRYK LERQRMNNGG VSASHWPWFK KMENIVGNSL  240
PGKAVSDEDK GVSSPGTTPR QSKSRNAMAI ISPVSQMNKV KSAPSIKWRR VVFKISGAAL  300
AGTAPNNVDS KLAMLIAREV ALACHNGVEV AIVVGGRNFF CGDAWVTATG LDRSTAYQIG  360
MMATVMNSVL LQSALEKMGV QTRVQTAFSM QEVAEPYSRQ RAIRHLEKGR VVIFAGIGAG  420
TGNPLFSTDT AAALRALEIH AEAVLKGTNV DGVYDCNSQD NNFTFEHISF RDVVTRGATS  480
MDSMALTFCE ENRIPVVVFN LLEPGNISKA LCGEQVGTLI DQAGRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein