PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000378.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 547aa MW: 62280.5 Da PI: 5.7176

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000378.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.5	1.4e-26	53	135	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW++qe+laL+++r++m+ ++++++ k plW+evs+km e g +r++k+Ckek+en+ k+++++ke+ + + + +++f+q Pav_sc0000378.1_g010.1.mk 53 RWPRQETLALLKIRSDMDAEFKEASIKVPLWQEVSRKMGELGHNRTAKKCKEKFENIYKYHRRTKESGRPN----GKAYRFFEQ 132 8***************************************************************99974....4569*** PP trihelix 85 lea 87 lea Pav_sc0000378.1_g010.1.mk 133 LEA 135 985 PP
2	trihelix	95.5	5e-30	383	467	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+k+ev aLi++r + + +++++ k+plWee+s++m++ g+ rs+k+Ckekwen+nk+y++ike++kkr +e+s+tc y + Pav_sc0000378.1_g010.1.mk 383 RWPKEEVEALIKIRADFDLQYQESGPKGPLWEEISAAMEKLGYDRSSKRCKEKWENINKYYRRIKESNKKR-PEDSKTCGYVRL 465 8*******************************************************************8.99****9988 PP trihelix 85 le 86 l+ Pav_sc0000378.1_g010.1.mk 466 LD 467 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MLENSKLPEN PSTATSNQKN EEVAGGGGPA SVGFEEEDRA GLEEGYRNWA GNRWPRQETL 60 ALLKIRSDMD AEFKEASIKV PLWQEVSRKM GELGHNRTAK KCKEKFENIY KYHRRTKESG 120 RPNGKAYRFF EQLEALDHHD FELPPPPAAE KVQTSVAEIA TNPTNVVYNA IPCSSIQHPD 180 SSFIENSSST TSSSSKASEG THKKKRRLAE FFERMMNEVI DKQENLQKKF VEVLEKHEQD 240 RIAREEAWKM QELARIKREK EILVQERSVA AAKDAAVLAF LQKFSEQSGT MQFPEQAFSV 300 HFPAQPPSSM QFPEQPSPVQ LPLQPPSGQF PEQSTPVQLP VNSQADTLMD KQEKTNYANV 360 VHMSLDNQER NNGRRYMHMS SSRWPKEEVE ALIKIRADFD LQYQESGPKG PLWEEISAAM 420 EKLGYDRSSK RCKEKWENIN KYYRRIKESN KKRPEDSKTC GYVRLLDALH NKKTNSVESQ 480 VNSTYELKPE ELLMHMMGGQ AEQHQPETVT EDGDSENVDQ IQGDDENADG DGYQIASGNP 540 SSMAIMS

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MLENSKLPEN PSTATSNQKN EEVAGGGGPA SVGFEEEDRA GLEEGYRNWA GNRWPRQETL  60
ALLKIRSDMD AEFKEASIKV PLWQEVSRKM GELGHNRTAK KCKEKFENIY KYHRRTKESG  120
RPNGKAYRFF EQLEALDHHD FELPPPPAAE KVQTSVAEIA TNPTNVVYNA IPCSSIQHPD  180
SSFIENSSST TSSSSKASEG THKKKRRLAE FFERMMNEVI DKQENLQKKF VEVLEKHEQD  240
RIAREEAWKM QELARIKREK EILVQERSVA AAKDAAVLAF LQKFSEQSGT MQFPEQAFSV  300
HFPAQPPSSM QFPEQPSPVQ LPLQPPSGQF PEQSTPVQLP VNSQADTLMD KQEKTNYANV  360
VHMSLDNQER NNGRRYMHMS SSRWPKEEVE ALIKIRADFD LQYQESGPKG PLWEEISAAM  420
EKLGYDRSSK RCKEKWENIN KYYRRIKESN KKRPEDSKTC GYVRLLDALH NKKTNSVESQ  480
VNSTYELKPE ELLMHMMGGQ AEQHQPETVT EDGDSENVDQ IQGDDENADG DGYQIASGNP  540
SSMAIMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	207	KKKRR
2	203	208	KKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-106	Trihelix family protein