PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000376.1_g250.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 722aa MW: 83857.9 Da PI: 8.7012

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000376.1_g250.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.9	2.5e-16	39	125	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Y++YA++vGF ++k++skk + ge + t+ Cs++g ++ ++ ++ ++ +++Cka+l+ dg+w+v++++l Pav_sc0000376.1_g250.1.br 39 DYYKKYANRVGFPMKKRSSKKG-DCGELKYVTLSCSRSGIPQGIVSN---VLKPYPSIKCNCKAQLRAGICLDGRWKVNSVKLV 118 69************998887.8889***********99888...8999************************** PP FAR1 85 HnHelap 91 HnH l+p Pav_sc0000376.1_g250.1.br 119 HNHGLNP 125 *9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MSEENDEVEI GLENTMSLEE TKQEPKVNMI FNTADEVLDY YKKYANRVGF PMKKRSSKKG 60 DCGELKYVTL SCSRSGIPQG IVSNVLKPYP SIKCNCKAQL RAGICLDGRW KVNSVKLVHN 120 HGLNPDDARY FRMNRAISSY MKRKIEVNDR AGIRVNKNYN SMVVEAGGHE NMSFMEKDYE 180 SGRLRNVFWA DSRSRAAYEE FGDAITFDTT YLTNKYDMPF APFVGVNHHG HSILLGCGLI 240 SSEDTETFVW LFKVWLACMS RHAPCGIITY QDRAMKNAIE IVFPNTRHRW CLWHIMKKLH 300 EKLKSYKHYE SIKFTLENIV YDSLTNIEFE DRWKEMIEKY ELQSNDWLRG LYDERRRWVP 360 SFVKGSFWAG MSTTQRSESM NAFFDDHVNS KTTLKQFVEQ YENALMTKVE KENQADYKSS 420 SADIQCSTHY FMEKQAQGVY TIAKFKEFQD ELTGKMYCEV VDTKEDGVFL KYQISKDMII 480 AGKKESVNFT VIFHEFDSEV KCNCSKFEFK GILCRHAIYV LIKHKMDLIP DKYILRRWRK 540 DVTRRHTKIK ISYNESNATL EAHQCDKMQK TFDEIKELAT DSEEKCVIVM AWMQKLKEQL 600 SNQDNVCGST QPTPESPTGR SFDNCVNEIS NSKKILTPLA VRSKGRPPFK RKQSKMEQIV 660 RKRKQGEKKS TSQEKNTNKR KGMKAFQMVE SDVPPTDKIS CDIVGTQESI LFICYNGCDI 720 GI

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MSEENDEVEI GLENTMSLEE TKQEPKVNMI FNTADEVLDY YKKYANRVGF PMKKRSSKKG  60
DCGELKYVTL SCSRSGIPQG IVSNVLKPYP SIKCNCKAQL RAGICLDGRW KVNSVKLVHN  120
HGLNPDDARY FRMNRAISSY MKRKIEVNDR AGIRVNKNYN SMVVEAGGHE NMSFMEKDYE  180
SGRLRNVFWA DSRSRAAYEE FGDAITFDTT YLTNKYDMPF APFVGVNHHG HSILLGCGLI  240
SSEDTETFVW LFKVWLACMS RHAPCGIITY QDRAMKNAIE IVFPNTRHRW CLWHIMKKLH  300
EKLKSYKHYE SIKFTLENIV YDSLTNIEFE DRWKEMIEKY ELQSNDWLRG LYDERRRWVP  360
SFVKGSFWAG MSTTQRSESM NAFFDDHVNS KTTLKQFVEQ YENALMTKVE KENQADYKSS  420
SADIQCSTHY FMEKQAQGVY TIAKFKEFQD ELTGKMYCEV VDTKEDGVFL KYQISKDMII  480
AGKKESVNFT VIFHEFDSEV KCNCSKFEFK GILCRHAIYV LIKHKMDLIP DKYILRRWRK  540
DVTRRHTKIK ISYNESNATL EAHQCDKMQK TFDEIKELAT DSEEKCVIVM AWMQKLKEQL  600
SNQDNVCGST QPTPESPTGR SFDNCVNEIS NSKKILTPLA VRSKGRPPFK RKQSKMEQIV  660
RKRKQGEKKS TSQEKNTNKR KGMKAFQMVE SDVPPTDKIS CDIVGTQESI LFICYNGCDI  720
GI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	650	664	KRKQSKMEQIVRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1 family protein