PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000375.1_g500.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 454aa MW: 49512.5 Da PI: 5.2532

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000375.1_g500.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.8	1.1e-33	253	310	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Pav_sc0000375.1_g500.1.mk 253 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 310 8**************************************.*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MASSSGSLDT SANSHPTFTF STHPFMTTSF SDLLASGTDE DPSTNTTARH AGHGGLADRI 60 AERTGSGVPK FKSLPPPSLP ISPPSVSPSS YFAIPAGLSP AELLDSPVLL STSNILPSPT 120 TGSFAAQAFW KANSGNNQQI VKQESKNYSD FSFQTQTRPL TSSSTMFQSS NGTIQTAQEQ 180 AWSNSYFQAQ EPQKQDDFSS GKSMVKPEYG SVQSFSSGMA TNIQNNSQAN GGFQSEYSNY 240 NHQQSQTLSR KSDDGFNWRK YGQKQVKGSE NPRSYYKCTY PNCPTKKKVE RSLDGQITEI 300 VYKGNHNHPK PQNTRRSSSN SSHAIQASNP NTNEIPDQSF ANHGNSQMDS IGTPENSSIS 360 MGDDDFEQSS QKSKSGGGDE FDEDEPNAKR WQQTSEGQQA PFTLEMLQSP GSFGFAGFDN 420 SMGSYMNQAQ LNDNMFSKTK EEPRDDAFFE SLLC

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MASSSGSLDT SANSHPTFTF STHPFMTTSF SDLLASGTDE DPSTNTTARH AGHGGLADRI  60
AERTGSGVPK FKSLPPPSLP ISPPSVSPSS YFAIPAGLSP AELLDSPVLL STSNILPSPT  120
TGSFAAQAFW KANSGNNQQI VKQESKNYSD FSFQTQTRPL TSSSTMFQSS NGTIQTAQEQ  180
AWSNSYFQAQ EPQKQDDFSS GKSMVKPEYG SVQSFSSGMA TNIQNNSQAN GGFQSEYSNY  240
NHQQSQTLSR KSDDGFNWRK YGQKQVKGSE NPRSYYKCTY PNCPTKKKVE RSLDGQITEI  300
VYKGNHNHPK PQNTRRSSSN SSHAIQASNP NTNEIPDQSF ANHGNSQMDS IGTPENSSIS  360
MGDDDFEQSS QKSKSGGGDE FDEDEPNAKR WQQTSEGQQA PFTLEMLQSP GSFGFAGFDN  420
SMGSYMNQAQ LNDNMFSKTK EEPRDDAFFE SLLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-43	WRKY family protein