PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000368.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 416aa MW: 45699.6 Da PI: 8.262

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000368.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	139	184	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Pav_sc0000368.1_g030.1.mk 139 RGHWRPAEDSKLKELVAQYGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 184 899***************************.*********996 PP
2	Myb_DNA-binding	55.9	9.7e-18	191	234	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Pav_sc0000368.1_g030.1.mk 191 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MAPQHLKSDC GGFTRYEDLN FLPPPPVSHQ LSLSNTFGAM VHPHFYSGGQ DHSGTSSEMG 60 FEPFSPSSSQ LSKKPWGFQP LENGGTRITD HGDQYSVLLG IDQKKGMPLS LAGEEADEGR 120 SLAAAGRTGT GGHTKSCARG HWRPAEDSKL KELVAQYGPQ NWNLIAEHLD GRSGKSCRLR 180 WFNQLDPRIN RRAFSEEEEE RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKH 240 REQSNVYKRR KPSSPQATQL PKEFDHPHVT NFQKNTSSTE STVSISTIDD TQSASTCTEL 300 SLTPSTRLPL SFFSKLHPFQ QRQNFGSQMR SSSDGGSGKI IGNGNGSCKT GPLGGAMMGV 360 DQSGHQSDSN SDFSGDESVT TTRTNVSLSG ENQNQNLNNN EKISMSFIDF LGVGMG

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MAPQHLKSDC GGFTRYEDLN FLPPPPVSHQ LSLSNTFGAM VHPHFYSGGQ DHSGTSSEMG  60
FEPFSPSSSQ LSKKPWGFQP LENGGTRITD HGDQYSVLLG IDQKKGMPLS LAGEEADEGR  120
SLAAAGRTGT GGHTKSCARG HWRPAEDSKL KELVAQYGPQ NWNLIAEHLD GRSGKSCRLR  180
WFNQLDPRIN RRAFSEEEEE RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKH  240
REQSNVYKRR KPSSPQATQL PKEFDHPHVT NFQKNTSSTE STVSISTIDD TQSASTCTEL  300
SLTPSTRLPL SFFSKLHPFQ QRQNFGSQMR SSSDGGSGKI IGNGNGSCKT GPLGGAMMGV  360
DQSGHQSDSN SDFSGDESVT TTRTNVSLSG ENQNQNLNNN EKISMSFIDF LGVGMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-67	MYB family protein