PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000359.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 155aa    MW: 17151.8 Da    PI: 7.7457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000359.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-054466123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C + F ++  L  H++ H
  Pav_sc0000359.1_g090.1.mk 44 FSCNYCQRKFYSSQALGGHQNAH 66
                               89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MDFQPNTSLH LSLPNDQVNL DLVLEPSYTS SSSSFSPSEQ PRVFSCNYCQ RKFYSSQALG  60
GHQNAHKLER TLAKKSREQL SSAARAHGGS NQRPAGSNSF SDSSHPRQIH EAHNLGGLKE  120
HQGHAGRFAG HMNCGYRPEN NVEEEIGHLD LSLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-35C2H2 family protein