PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000355.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 333aa    MW: 36194.9 Da    PI: 4.5061
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000355.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36321232102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y++++d+++++liswse+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ 
  Pav_sc0000355.1_g080.1.mk  32 FLTKTYQLVDDPSVDDLISWSEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDC 106
                                9*****************************************************************99.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                Fk+g+k ll++i+r+k 
  Pav_sc0000355.1_g080.1.mk 107 FKRGEKGLLREIQRRKI 123
                                **************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MASLQADQNG DSCPVNGAGG GGDSQRTLPT PFLTKTYQLV DDPSVDDLIS WSEDGSAFIV  60
WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDCFKRG EKGLLREIQR  120
RKISPSVSAS PAAITATLAT VSAVAPGVSP SNSGDEQVIS SNSSPVAPPA TLLSRIRSCT  180
TTSDVLEENE RLRKENMQLS HELTQLRGLC NNILALMTNY ASGQLEGGGG GGGSVLDEGK  240
PLELSPVKEA EPSGNGVVRE GSKAEASAEE EEDEEEEEEM RPRLFGVSIG VKRVRRDEGE  300
EEQHREGSEA MKSEPSDGSS KRDQDSTWLE LGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-89HSF family protein