PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000333.1_g190.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 445aa MW: 47479.2 Da PI: 5.9683

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000333.1_g190.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	337	374	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Pav_sc0000333.1_g190.1.mk 337 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 374 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNEHIGSFGC PNDMVDIKAS RSSCGEINNS 60 VSDHDDDHQH TDSGSVLIDS TLQMIGFDHS SSSSSTPSDL NQALLLSRSG GGRAESNFHN 120 SMLQEGVGAD EDSSSLIDGF KPMSQDFSLD QLGSSSSSGF PITSSSSAAN SYGFPSTLFQ 180 SLFDSEVSQA QPQQSLFNNN HFSNDLLLPP SPTSSCWPPR YSPSSCLRPS GVSLPKQLQP 240 GGGGGGGGLH FSNNINTPFW NTPAATALNH GNSIRSSNGL FSSSQQSQYT APASSALDVQ 300 DSSSVVKKSG SSMSSCEPVF KRARIETPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT 360 ASVLHEAIEY IKFLHEQVSV LSTPYMKNGA PMQHQQGSDH KTKEAEGAKH DLKSRGLCLV 420 PISSTFPVAN ETTDFWTPTF GATFR

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNEHIGSFGC PNDMVDIKAS RSSCGEINNS  60
VSDHDDDHQH TDSGSVLIDS TLQMIGFDHS SSSSSTPSDL NQALLLSRSG GGRAESNFHN  120
SMLQEGVGAD EDSSSLIDGF KPMSQDFSLD QLGSSSSSGF PITSSSSAAN SYGFPSTLFQ  180
SLFDSEVSQA QPQQSLFNNN HFSNDLLLPP SPTSSCWPPR YSPSSCLRPS GVSLPKQLQP  240
GGGGGGGGLH FSNNINTPFW NTPAATALNH GNSIRSSNGL FSSSQQSQYT APASSALDVQ  300
DSSSVVKKSG SSMSSCEPVF KRARIETPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT  360
ASVLHEAIEY IKFLHEQVSV LSTPYMKNGA PMQHQQGSDH KTKEAEGAKH DLKSRGLCLV  420
PISSTFPVAN ETTDFWTPTF GATFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	1e-55	bHLH family protein