PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000323.1_g1070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 526aa MW: 59236 Da PI: 8.1794

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000323.1_g1070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	124	145	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F++ +L+ H+r+H Pav_sc0000323.1_g1070.1.mk 124 SCYVCNKNFPSIKSLHGHMRLH 145 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MKKLQEKNKH LQEDDEDQDY QESMDHDDED IHSQESEQEV ELHDDQKGKQ VVQSDVHHRN 60 GDRVCEQCGK RFQNGKALGG HIKVHFNQSL LPKKNKNLFK PKNKHLSLKE AHSPVGDDHS 120 NKISCYVCNK NFPSIKSLHG HMRLHRERDW KGVRPPGPAL SPCDESNSSS SYENVSEDED 180 DGDSSLSDRT IDTDNDVANF LVNWTKIEQR RRSLIANQTE PNHAENSGLS NQRQRMPHYA 240 EDQVGEFAGK KPIEESPVGY KGSPSSKKIK CDGRSNKKST MEASKSTGGT KPMKDIGLLD 300 QTHKQIPTKR QEFGSRRSDT ISDVNMDEDS GFSSKYVEDQ VGELSVKKPI QKSPVGYKGK 360 PSLKIKLKLE GKGKASMQDV DENAVQTSWK TKPKMMTMKS TSKTGTKPIK DTALLYQTRK 420 QMARKTQEFG TKFAGKGKYH EEAEAVEHGI KQFECNICPC KFSTGQALGG HKRGHNYKAV 480 PVEEARGTAQ VAPMNLEDGE IRTDPKKFNL DLNQLPHQTD DEDIGR

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MKKLQEKNKH LQEDDEDQDY QESMDHDDED IHSQESEQEV ELHDDQKGKQ VVQSDVHHRN  60
GDRVCEQCGK RFQNGKALGG HIKVHFNQSL LPKKNKNLFK PKNKHLSLKE AHSPVGDDHS  120
NKISCYVCNK NFPSIKSLHG HMRLHRERDW KGVRPPGPAL SPCDESNSSS SYENVSEDED  180
DGDSSLSDRT IDTDNDVANF LVNWTKIEQR RRSLIANQTE PNHAENSGLS NQRQRMPHYA  240
EDQVGEFAGK KPIEESPVGY KGSPSSKKIK CDGRSNKKST MEASKSTGGT KPMKDIGLLD  300
QTHKQIPTKR QEFGSRRSDT ISDVNMDEDS GFSSKYVEDQ VGELSVKKPI QKSPVGYKGK  360
PSLKIKLKLE GKGKASMQDV DENAVQTSWK TKPKMMTMKS TSKTGTKPIK DTALLYQTRK  420
QMARKTQEFG TKFAGKGKYH EEAEAVEHGI KQFECNICPC KFSTGQALGG HKRGHNYKAV  480
PVEEARGTAQ VAPMNLEDGE IRTDPKKFNL DLNQLPHQTD DEDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	6e-14	C2H2 family protein