PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000323.1_g1050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 314aa MW: 35619.9 Da PI: 8.8034

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000323.1_g1050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+++ +L H+ +H Pav_sc0000323.1_g1050.1.mk 113 FSCHICKKIFPSRKSLYGHMGSH 135 89******************887 PP
2	zf-C2H2	11.1	0.0012	214	236	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r H Pav_sc0000323.1_g1050.1.mk 214 HTCNICYKKFPTGQALGGHKRAH 236 79*************99999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MENFREEDRE YDGVRDDHHR MRSEDTKQGV VHGFDDSKGK EVVLRSLNCE NNQDPDRSRI 60 CNVCGKRFGS GQALGGHISV HFEPRLGPKK MNNKFKVTKQ RRLQYYPSLD NKFSCHICKK 120 IFPSRKSLYG HMGSHSRRVK SPSFSSSSTS SSAEYNDLDL KEQDYDRVKF LPGWAKKDRG 180 GMKLANQTPN YNNDFARKYN KFSSSKRLKF LDGHTCNICY KKFPTGQALG GHKRAHYFDE 240 AQPVLEAPPV ANKVKVAEAP PAATVEVAST DDHDDGETID PVDSSPLMQL AEQALHLASR 300 RILDLDLNEP PKEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-08	C2H2 family protein