PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000299.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 268aa    MW: 30875.9 Da    PI: 10.4794
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000299.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2285.4e-09194227137
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  Pav_sc0000299.1_g080.1.mk 194 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYR 227
                                89****99**********99966...3.6*******95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MKQNFEWTAW GLKWDAPKSS SPLFSDIILL WQHKTKQLKA KTSTHEMELM MVKNEENTRR  60
RRLSTVDREA QESRCVKRRR RDPAAVAVSC DNSQSEQHLP QKPADQTSAT TTKRSSRFRG  120
VSRFESETNF SGIDGLVDLK PTCGISSLGM QRRRRKGNKI SDYEEEIDIM QTVTKEEYLA  180
SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYRPET VAKPQYILPF  240
MANSNIPTEE PSFSHTNPFA SGALLYEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15981RRRRLSTVDREAQESRCVKRRRR
26082RRRRLSTVDREAQESRCVKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.22e-34ERF family protein