PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000293.1_g600.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 12040.6 Da PI: 7.9423 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90 | 2.9e-28 | 13 | 91 | 1 | 79 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 aCa+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s + e++ r +dPv+ ++++ Pav_sc0000293.1_g600.1.br 13 ACASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESFLTEGNTRKNDPVRAVLAL 91 7************************************************************************988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence |
MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM 60 AAPDQRQAAA ESFLTEGNTR KNDPVRAVLA LSEVSMPKFG DLKENSIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 4e-20 | LBD family protein |