PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000259.1_g440.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 159aa    MW: 18343.6 Da    PI: 4.4968
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000259.1_g440.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26025.43.9e-08216062101
                     DUF260  62 vyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                                +  A++r + PvyG+ +vi++lq ql  +++el++++++l
  Pav_sc0000259.1_g440.1.mk  21 LILANVRDKFPVYGCWEVIWHLQYQLLLAEEELQAVQAQL 60 
                                6679*******************************99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MSPISLPTIS SFTFFFFLLL LILANVRDKF PVYGCWEVIW HLQYQLLLAE EELQAVQAQL  60
AMYRQHHHHQ HQISSVPEYT IQSQLGVLQP LSLQPDVVQD YDELHPFFDT IDDRQSYIDS  120
KAAYESSSEE SFKDTTQSME HVENALKNAA SCFSLTSVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-07LBD family protein