PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000259.1_g300.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33108.3 Da    PI: 4.4459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000259.1_g300.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1994148357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                k++++t +q++ Le+ F +++++  e++  LAk lgL+ rqV +WFqNrRa++k+
  Pav_sc0000259.1_g300.1.mk  94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKN 148
                                56689************************************************95 PP
2HD-ZIP_I/II127.74.8e-4194183291
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kkrrl+ +qv++LE+sF++e+kLeperK  la++Lglqprqva+WFqnrRAR+k+kqlEkdye+L+++y++lk++ e+L +e++
  Pav_sc0000259.1_g300.1.mk  94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYEVLQANYNSLKADCESLAEEND 177
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreel 91 
                                +L++e+
  Pav_sc0000259.1_g300.1.mk 178 KLKAEV 183
                                ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MAGGRVYSGG ASSSSLSVLL QNQRGPCASE PLDSLFLSGS SNSSSASPFL GSRSMVSFED  60
VRGGNGSNRS LFHQYEHEDN GDDDLDEYFH QPGKKRRLTV DQVQFLEKSF DMENKLEPER  120
KILLAKDLGL QPRQVAIWFQ NRRARWKNKQ LEKDYEVLQA NYNSLKADCE SLAEENDKLK  180
AEVLVLSGKL LHKEKESETS ELSDTNKVSQ EPPQNPTADS LSECEVSKVS AVASKQEDLS  240
SGKSDIFDSD SPHYTDGVHS SILEPGDSSY VFEPDQSDLS QDEEDNLSKS LLPPYIFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKNKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43HD-ZIP family protein