PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000220.1_g2500.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 290aa    MW: 32735.6 Da    PI: 10.0878
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000220.1_g2500.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-1279135155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  Pav_sc0000220.1_g2500.1.mk  79 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 135
                                 789******************88887786625555.********************98 PP
2AP251.91.8e-16178229155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Pav_sc0000220.1_g2500.1.mk 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAHAYDIAAIEYRG 229
                                 89****99**********99966...3.6*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MDHLTSVKSE LSQGKRPLCI IEVDTLVNKC VKRRRRDSSA VVAPAGCSDQ QQGDQRPQQQ  60
AQQAGQSTVA TTTTVKRSSR FRGVSRHRWT GRYEAHLWDK GSWNPTQRKK GKQGAYDEEE  120
SAARAYDLAA LKYWGTSTFT NFPVPDYENE IEIMNTLSKE EYLASLRRRS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAAHAY DIAAIEYRGI NAVTNFDLST  240
YIRWLRPGAN SLASQEPKLS TESLPMPASS NSIPSKEGKQ MSMFQPNSFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113PTQRKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.15e-75AP2 family protein