PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000220.1_g1790.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 483aa MW: 54426.6 Da PI: 6.1222

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000220.1_g1790.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.6e-14	26	70	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd++l + + +G+++W+ Ia+++ +t qc+ rw++yl Pav_sc0000220.1_g1790.1.mk 26 TWSQEEDDILRNQISVHGTDNWAIIASKFK-DKTTRQCRRRWYTYL 70 6**************************9.***********97 PP
2	Myb_DNA-binding	43.6	6.7e-14	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + Pav_sc0000220.1_g1790.1.mk 76 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 119 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MPQQEPRKKL GNEYSNSKKK ERHIVTWSQE EDDILRNQIS VHGTDNWAII ASKFKDKTTR 60 QCRRRWYTYL NSDFKKGGWS PEEDMLLCEA QKIFGNRWTE IAKVVSGRTD NAVKNRFSTL 120 CKKRAKYEAL AKENATSYIN SNDKRVIIRN GFNTDGTTET TAPSQKMRRT HIPNLSENCN 180 SGDRLFEQCG KMNQQLRAPF TVLIQNFHNV DNLPDQHNVS STKEVPGNAA QNSKFQGSFL 240 KKDDPKITAL MQQAELLSSL ALKVNTENTD QSLENAWKVL QDFLNQSKES DILSYGITDF 300 DFQLEDLKYL LEDLRSTNEG SRPSWQQPDL YDESPGSSEY STGSTLLSQT ECYVEQNEAE 360 IGTLIEEIQP GSQSIPIGGE NDVRECEKGI VSSGTRKQEI FPSCNEGTKT DAVISVSSNT 420 EFSSPNQVTP LFRSLAAGIP SPKFSESERS FLLKTLGVES PSPYPSNNPS RPPPCKRALL 480 QSL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MPQQEPRKKL GNEYSNSKKK ERHIVTWSQE EDDILRNQIS VHGTDNWAII ASKFKDKTTR  60
QCRRRWYTYL NSDFKKGGWS PEEDMLLCEA QKIFGNRWTE IAKVVSGRTD NAVKNRFSTL  120
CKKRAKYEAL AKENATSYIN SNDKRVIIRN GFNTDGTTET TAPSQKMRRT HIPNLSENCN  180
SGDRLFEQCG KMNQQLRAPF TVLIQNFHNV DNLPDQHNVS STKEVPGNAA QNSKFQGSFL  240
KKDDPKITAL MQQAELLSSL ALKVNTENTD QSLENAWKVL QDFLNQSKES DILSYGITDF  300
DFQLEDLKYL LEDLRSTNEG SRPSWQQPDL YDESPGSSEY STGSTLLSQT ECYVEQNEAE  360
IGTLIEEIQP GSQSIPIGGE NDVRECEKGI VSSGTRKQEI FPSCNEGTKT DAVISVSSNT  420
EFSSPNQVTP LFRSLAAGIP SPKFSESERS FLLKTLGVES PSPYPSNNPS RPPPCKRALL  480
QSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-175	MYB family protein