PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000206.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 254aa MW: 27779.9 Da PI: 5.1865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000206.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.6	3.9e-07	214	238	7	30
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 ++ErrRR+++N+++ Lr+++Pk + Pav_sc0000206.1_g070.1.mk 214 MAERRRRKKLNDRLYMLRSVVPKiS 238 79********************955 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MSSSAVWMFP SKSRFSSLLN VVSTNPFDNG FDLGCDSGFL SSFQGNQPSN SSALMGFTAI 60 NSQSQMGTPE LSSSAEFPTT RLQPAPNNDT ELDGNFSLTG FQGFDGSGKR AALRQNFAGY 120 GTDKLGNLEI SGPRYGGVLE SLERKRKKNV EGEMEEGSMD VSGLNYDSDE FNEYSQVEEN 180 VKNAGSNSNA NSTVTGVDGD RKGKKNGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKA 240 LEIYEIDLLV QYIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	148	RKRKK
2	216	223	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-33	bHLH family protein