PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000175.1_g500.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1800aa MW: 195752 Da PI: 4.3184

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000175.1_g500.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4e-06	1775	1798	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr f+++G+Ck G++C + H+ Pav_sc0000175.1_g500.1.mk 1775 GQRVCR-FFESGHCKKGASCDYLHP 1798 678999.8888*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1800 aa Download sequence
MEAEEEDVSK VNEPSVPVQN DAVLSPETEE ELRRTEPQCM SESLPEPELK PETEGFGLGV 60 EGESDAVPTE DTEIVEELNV AEGHGTEDTE IVEELNVAEG HGTEDTEIVE ELNDAEGHGT 120 EDTEIVEELN VAEGHGTEDT EIVEELNVPE GHGPEDTEIV EELNVPEGHG PEDTEIVEEL 180 NVPEGHGPED TEIVEELNVP EGHGPEDTEI VEELNVPEGH GPEDTEIVEE LNVPEGHGPE 240 DTEIVEELNV PEGHGPEDTE IVEELNVPEG HGPEDTEIVE ELNVPEGHGP EDTEIVEELN 300 VPEGHGPEDT EIVEELNVPE GHGTEDTEIV EELKVAEGHG TEDTEIVKEL SVAEGQVTEE 360 NEVGAVDEKD EKGLETEKVL SEEGVVAHSA KEAAEKSNVA EVAEETVISW KDQAEEKTAE 420 VEGEEAEAEA EKVQAVGEQA EAEGEKTEAE AEVEGDDEAN VTDMVAETDM VEEVDVADDA 480 MEETTEAEET EAAEEEAEGM EVEEEEEDEE TNRAGSGGKR KRGKSSKVTG KLLSKKKMEE 540 DVCFICFDGG ELVLCDRRGC PKAYHPSCVN RDEAFFRAKG RWNCGWHLCS NCEKNAHYMC 600 YTCTFSLCKG CTKDAVFLCV RGNKGFCETC MKTVMLIEKN EQGNKDTNEV DFDDKTSWEY 660 LFKDYWIDLK ERLSLTVDEL AQAKNPWKGA TGHKQESHDE PYDVNNDEGS ESDNSENLDL 720 ANSKKRKAKK RLRTRGKGKD SSSPATATSS GGRSADDSTG WGSKELLEFV MHMRNGDKSA 780 LSQFDVQALL LEYIKRNKLR DPRRKSQIIC DIRLQNLFGK PRVGHFEMLK LLESHFLVKE 840 DSQADDLQGS VVDTEGNQLE ADGNSDTPAK SSKDKRRKTR KKGDGRGPQS NIDDFAAIDI 900 HNINLIYLKR NLVEDLLDDL DNFGDKVAHS FVRIRISGSG QKQDLYRLVQ VIGTCKAAEP 960 YKVGKRMTDI LLEILNLNKT EIISIDIISN QDFTEDECKR LRQSIKCGLI NRLTVGDVQE 1020 KALALQAVRV KDWLETEIVR LSHLRDRASE KGQCVEKLQL LKTPEERQRR LEETLEIHVD 1080 PNMDPSYESE EDEDEGDDKK QESYIRPTGS GFGRKGREPI SPRRAGPSSN DSWSGTRNFS 1140 NMNRELSRNM SNKGFFNKAE NTTAAGEIVN DSWGHGRDRE TQQTNHWEKK QNISSLETGV 1200 RSTQSAVPSE SSPAGGSENS VAHLSTGVAQ SAANINESEK IWHYKDPSGK VQGPFSMVQL 1260 RKWNHTGYFP ANLRVWKNTE KEEDSILVTD ALAGKFQKDP SFVDSSFPKA QMVHNSHLSP 1320 VHSGKSQGAL FQRVTEGQAG GVSWGSQNEI NSSSGRGTPQ SVEVPKYSSD GWATTNLPSP 1380 TPSQTPLGGA RGQAYESNWS PSPAHPGGSV LGGNGVLQPT AVVTPESALR ASGNDRSSSL 1440 PGINAAPKSE NATLLGSTTA LRMHGQVTGS APVLSNASMN QVADVNNLVS NLQNLVQSVT 1500 SRAPASDARG WGSGSVPKQE MTASGPVPGS ESQPWGGAPS QRIEPNNAAT VPAQHHTHGY 1560 WNNTPSTNNA PSSMNTGNLA GNFPTSGFSG VPHSDPWRPP VPSNHTYIQP PAQQQAPWGV 1620 GVPDNQSAVP RTGQENQNTS WVPMAGNPNV TWGGPVPGNT NMNWGPPSQG PGWTAPSQGP 1680 VPGNAVTNWV PPGQGPPSVS ANAGWAPPGQ GPTLGNANPG WSAPNATQNG DRFPNQRDRG 1740 SHGDPGFGGG KPWNRQSSFG GGGGGGGSSR PPFKGQRVCR FFESGHCKKG ASCDYLHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1800 aa Download sequence

MEAEEEDVSK VNEPSVPVQN DAVLSPETEE ELRRTEPQCM SESLPEPELK PETEGFGLGV  60
EGESDAVPTE DTEIVEELNV AEGHGTEDTE IVEELNVAEG HGTEDTEIVE ELNDAEGHGT  120
EDTEIVEELN VAEGHGTEDT EIVEELNVPE GHGPEDTEIV EELNVPEGHG PEDTEIVEEL  180
NVPEGHGPED TEIVEELNVP EGHGPEDTEI VEELNVPEGH GPEDTEIVEE LNVPEGHGPE  240
DTEIVEELNV PEGHGPEDTE IVEELNVPEG HGPEDTEIVE ELNVPEGHGP EDTEIVEELN  300
VPEGHGPEDT EIVEELNVPE GHGTEDTEIV EELKVAEGHG TEDTEIVKEL SVAEGQVTEE  360
NEVGAVDEKD EKGLETEKVL SEEGVVAHSA KEAAEKSNVA EVAEETVISW KDQAEEKTAE  420
VEGEEAEAEA EKVQAVGEQA EAEGEKTEAE AEVEGDDEAN VTDMVAETDM VEEVDVADDA  480
MEETTEAEET EAAEEEAEGM EVEEEEEDEE TNRAGSGGKR KRGKSSKVTG KLLSKKKMEE  540
DVCFICFDGG ELVLCDRRGC PKAYHPSCVN RDEAFFRAKG RWNCGWHLCS NCEKNAHYMC  600
YTCTFSLCKG CTKDAVFLCV RGNKGFCETC MKTVMLIEKN EQGNKDTNEV DFDDKTSWEY  660
LFKDYWIDLK ERLSLTVDEL AQAKNPWKGA TGHKQESHDE PYDVNNDEGS ESDNSENLDL  720
ANSKKRKAKK RLRTRGKGKD SSSPATATSS GGRSADDSTG WGSKELLEFV MHMRNGDKSA  780
LSQFDVQALL LEYIKRNKLR DPRRKSQIIC DIRLQNLFGK PRVGHFEMLK LLESHFLVKE  840
DSQADDLQGS VVDTEGNQLE ADGNSDTPAK SSKDKRRKTR KKGDGRGPQS NIDDFAAIDI  900
HNINLIYLKR NLVEDLLDDL DNFGDKVAHS FVRIRISGSG QKQDLYRLVQ VIGTCKAAEP  960
YKVGKRMTDI LLEILNLNKT EIISIDIISN QDFTEDECKR LRQSIKCGLI NRLTVGDVQE  1020
KALALQAVRV KDWLETEIVR LSHLRDRASE KGQCVEKLQL LKTPEERQRR LEETLEIHVD  1080
PNMDPSYESE EDEDEGDDKK QESYIRPTGS GFGRKGREPI SPRRAGPSSN DSWSGTRNFS  1140
NMNRELSRNM SNKGFFNKAE NTTAAGEIVN DSWGHGRDRE TQQTNHWEKK QNISSLETGV  1200
RSTQSAVPSE SSPAGGSENS VAHLSTGVAQ SAANINESEK IWHYKDPSGK VQGPFSMVQL  1260
RKWNHTGYFP ANLRVWKNTE KEEDSILVTD ALAGKFQKDP SFVDSSFPKA QMVHNSHLSP  1320
VHSGKSQGAL FQRVTEGQAG GVSWGSQNEI NSSSGRGTPQ SVEVPKYSSD GWATTNLPSP  1380
TPSQTPLGGA RGQAYESNWS PSPAHPGGSV LGGNGVLQPT AVVTPESALR ASGNDRSSSL  1440
PGINAAPKSE NATLLGSTTA LRMHGQVTGS APVLSNASMN QVADVNNLVS NLQNLVQSVT  1500
SRAPASDARG WGSGSVPKQE MTASGPVPGS ESQPWGGAPS QRIEPNNAAT VPAQHHTHGY  1560
WNNTPSTNNA PSSMNTGNLA GNFPTSGFSG VPHSDPWRPP VPSNHTYIQP PAQQQAPWGV  1620
GVPDNQSAVP RTGQENQNTS WVPMAGNPNV TWGGPVPGNT NMNWGPPSQG PGWTAPSQGP  1680
VPGNAVTNWV PPGQGPPSVS ANAGWAPPGQ GPTLGNANPG WSAPNATQNG DRFPNQRDRG  1740
SHGDPGFGGG KPWNRQSSFG GGGGGGGSSR PPFKGQRVCR FFESGHCKKG ASCDYLHPDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein