PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000164.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 491aa MW: 53459.2 Da PI: 6.0189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000164.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	291	330	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Pav_sc0000164.1_g070.1.mk 291 RRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 330 8****************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MMNRCVPDFE MEDDYSIPTS SAPNRPRKSS LPDDEIMELL WQNGQVVMQS QNQRPSPNNK 60 KSSQAPSKYD AVLPEDRDIP RPQNHQLFMH EDEMASWLQY PLVDDPFCAD LLYPDSSTVH 120 QPNTTAGAEL RPNPISAPPS KPPIHPPRRT ELQNFLHCSK TNNNKARVSE TAPSSSKSVV 180 RESTTVVDSC DTPLVGHSSR ALDSGLDGGG GGGPAGAATS FATGVTANAA TSFPGKEIMT 240 CEMSLTSSPG GSSASASASA EPISSQKPRA GEDRKRKGRE AEDDGEFQSE RRRDRINEKM 300 KALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMVPMMFPGV QQYMPMGMGM 360 GMGMGMGMGM EMAGMTRPMM PFPNVLAGSS MPTAAAHLGP RFPVPPFHMQ PIPANDPARV 420 QATNQSDQML NALAAQNPNQ SRMPNFADPY QQFFNPQQMQ LPLQRNQAMA QPSSMPSSSK 480 GPETHENHQS G

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MMNRCVPDFE MEDDYSIPTS SAPNRPRKSS LPDDEIMELL WQNGQVVMQS QNQRPSPNNK  60
KSSQAPSKYD AVLPEDRDIP RPQNHQLFMH EDEMASWLQY PLVDDPFCAD LLYPDSSTVH  120
QPNTTAGAEL RPNPISAPPS KPPIHPPRRT ELQNFLHCSK TNNNKARVSE TAPSSSKSVV  180
RESTTVVDSC DTPLVGHSSR ALDSGLDGGG GGGPAGAATS FATGVTANAA TSFPGKEIMT  240
CEMSLTSSPG GSSASASASA EPISSQKPRA GEDRKRKGRE AEDDGEFQSE RRRDRINEKM  300
KALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMVPMMFPGV QQYMPMGMGM  360
GMGMGMGMGM EMAGMTRPMM PFPNVLAGSS MPTAAAHLGP RFPVPPFHMQ PIPANDPARV  420
QATNQSDQML NALAAQNPNQ SRMPNFADPY QQFFNPQQMQ LPLQRNQAMA QPSSMPSSSK  480
GPETHENHQS G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	301	RKRKGREAEDDGEFQSERRRDRINEKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	3e-53	bHLH family protein