PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000162.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 263aa MW: 29903.9 Da PI: 8.7068

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000162.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.1e-07	72	96	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f G C+yG C+FaHg Pav_sc0000162.1_g060.1.mk 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96 79*******.***********8 PP
2	zf-CCCH	17.2	9.1e-06	130	150	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr f+ +G C yGd+C++ H Pav_sc0000162.1_g060.1.mk 130 VCRLFFNGGKCTYGDKCRYPH 150 6*****************966 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDLSD IESQPFKKPR TSEVVLISTI 60 PMAQNKMLHC NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWRNWQGL ETEEGFKART 120 CDHRRTSNDV CRLFFNGGKC TYGDKCRYPH HATPENIREK SAISISTTGA HIGGSGQFYS 180 KRSLELMKLC GYMAVESKSV QNSRTSSTSM SKRRMGIGAT YHKQVQGMEC NFKWNELEKM 240 SRIYADWIED IPLVHGSSSK AEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-12	C3H family protein