PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000146.1_g300.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 555aa MW: 61809 Da PI: 4.9026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000146.1_g300.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.1e-14	327	373	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Pav_sc0000146.1_g300.1.mk 327 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 373 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MHLQSARIQT VVCIPLLDGV VELGTTERVP EDNALVQHVK TFFVDHNHPP PPKPALSEHS 60 TSNPATSSDH PHFHSPHLPA MCTDPPLDAA QEDEEEDEEE EDQEEDEEAE SDSEAETGRN 120 GQPVAPGPNP PAVSAPAAEP SELMQLEMSE DIRLGSPDDA SNNLDSDFHL LAVSQSRVNP 180 ADQQRQADSY RAESTRRWPP VQEPLSSGLQ PPPQGPVALE ELTHDDTHYS ETVSTILQRQ 240 ATRWTDSSFT DHVAYSTQSA FAKWTTRVEH HMLVPVEGTS QWLLKYILFS VPFLHTKYRD 300 ENSPKSHEGD ASTRLRKGTP QDELSANHVL AERRRREKLN ERFIILRSLV PFVTKMDKAS 360 ILGDTIEYVK QLRKKIQDLE ARNVQMEDDQ RSRSSGEIHR SSSMKELRSG LTVVERTRVG 420 PPGSDKRKLR IVEGSGGAAV AKPKTMEESP PPPPPPPPPQ PSPTPMVMGT SLEVSIIESD 480 GLLELQCPYR EGLLLDIMQT LRELRIETTV VQSSLNNGFF VAELRAKVKE NVNGKKISIT 540 EVKRVINQII PQSDS

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MHLQSARIQT VVCIPLLDGV VELGTTERVP EDNALVQHVK TFFVDHNHPP PPKPALSEHS  60
TSNPATSSDH PHFHSPHLPA MCTDPPLDAA QEDEEEDEEE EDQEEDEEAE SDSEAETGRN  120
GQPVAPGPNP PAVSAPAAEP SELMQLEMSE DIRLGSPDDA SNNLDSDFHL LAVSQSRVNP  180
ADQQRQADSY RAESTRRWPP VQEPLSSGLQ PPPQGPVALE ELTHDDTHYS ETVSTILQRQ  240
ATRWTDSSFT DHVAYSTQSA FAKWTTRVEH HMLVPVEGTS QWLLKYILFS VPFLHTKYRD  300
ENSPKSHEGD ASTRLRKGTP QDELSANHVL AERRRREKLN ERFIILRSLV PFVTKMDKAS  360
ILGDTIEYVK QLRKKIQDLE ARNVQMEDDQ RSRSSGEIHR SSSMKELRSG LTVVERTRVG  420
PPGSDKRKLR IVEGSGGAAV AKPKTMEESP PPPPPPPPPQ PSPTPMVMGT SLEVSIIESD  480
GLLELQCPYR EGLLLDIMQT LRELRIETTV VQSSLNNGFF VAELRAKVKE NVNGKKISIT  540
EVKRVINQII PQSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	337	ERRRRE
2	333	338	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-33	bHLH family protein