PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000143.1_g500.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 580aa MW: 63367.6 Da PI: 8.5164

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000143.1_g500.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.5e-07	267	287	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pav_sc0000143.1_g500.1.mk 267 PCPEFRK-GSCQKGDVCEYAHG 287 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MCKGSKDKLS PSNFTMESGF LKQNSGLVEL SASDNLDAFR SEVEEKGFHV DEAGFWYGRR 60 IGSKKMGFEE RTPLMIAAMF GSTKVLKYII QSGKADVNRS CGSDKVTALH CATAGGSTAS 120 LEVVKLLLDA SADANCVNAN GNKPIDLIAP ALKSPCSSRR KTMEMLLKGD MSVMESDQIA 180 NQEGDQQKFP SPQLSKDGIE KKEYPIDISL PDINNGIYGT DEFRMYTFKV KPCSRAYSHD 240 WTECPFVHPG ENARRRDPRK YPYSCVPCPE FRKGSCQKGD VCEYAHGVFE SWLHPAQYRT 300 RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMAAL SPLALGSSPM 360 SLPTTSTPPM SPLATSSSPK NGALWQNKGV SLKPSTPTQL QSSAHQIRQN MNQLRSSYPT 420 NMSSSPVRKP SSFGLDSPGA LAAAVMNSRS AAFAQRSHSF IDRGAMSHPH GLAAPANSST 480 MMQSSDWGSP GGKLDWGIQG DELNKLKKSA SFGFRSSNAG TPTTFMPSAV GEPDVSWVNS 540 LVRDVSSERS EQKYHHLNKG VHEMLPPWAE QMYIEQEQRA

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MCKGSKDKLS PSNFTMESGF LKQNSGLVEL SASDNLDAFR SEVEEKGFHV DEAGFWYGRR  60
IGSKKMGFEE RTPLMIAAMF GSTKVLKYII QSGKADVNRS CGSDKVTALH CATAGGSTAS  120
LEVVKLLLDA SADANCVNAN GNKPIDLIAP ALKSPCSSRR KTMEMLLKGD MSVMESDQIA  180
NQEGDQQKFP SPQLSKDGIE KKEYPIDISL PDINNGIYGT DEFRMYTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YPYSCVPCPE FRKGSCQKGD VCEYAHGVFE SWLHPAQYRT  300
RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMAAL SPLALGSSPM  360
SLPTTSTPPM SPLATSSSPK NGALWQNKGV SLKPSTPTQL QSSAHQIRQN MNQLRSSYPT  420
NMSSSPVRKP SSFGLDSPGA LAAAVMNSRS AAFAQRSHSF IDRGAMSHPH GLAAPANSST  480
MMQSSDWGSP GGKLDWGIQG DELNKLKKSA SFGFRSSNAG TPTTFMPSAV GEPDVSWVNS  540
LVRDVSSERS EQKYHHLNKG VHEMLPPWAE QMYIEQEQRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein