PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000143.1_g310.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 219aa MW: 24315.2 Da PI: 6.7817

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000143.1_g310.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.7	9.6e-12	1	32	15	47
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v+q+G+++W++I+ ++ gR++k+c++rw + Pav_sc0000143.1_g310.1.mk 1 LVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 32 69**************.*********985 PP
2	Myb_DNA-binding	58.7	1.3e-18	41	83	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ Pav_sc0000143.1_g310.1.mk 41 SFTPQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 83 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
LVAQHGPRNW SLISTGIPGR SGKSCRLRWC NQLSPTVQHK SFTPQEDNII VRAHALHGNK 60 WATIARLLPG RTDNAIKNHW NSTLRRRRQL PELSSASSDS NSAAPIRYEP GMKRQCLRAS 120 PEPDSFKEDV GGDGVVETSL TLSPPGEKEE NEVVLKSKDH EAVDNDDEGK CAVEMEETCL 180 LTIMQRMIAQ EVRNYVDSLR AEYGPTSFGL QSAALQNDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-46	MYB family protein