PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000143.1_g260.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 189aa MW: 20460.9 Da PI: 9.7584

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000143.1_g260.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.5	9.4e-15	16	100	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W++ + +Li+a ++ +l+rg+l++++W+ev++++ + +++ +qCk++++ l+k+yk +k + st+ Pav_sc0000143.1_g260.1.mk 16 CWSEGATSTLITAWGDRYLQLNRGNLRQNDWKEVADAVnsglnGGVKASKTDVQCKNRIDTLKKKYKLEKSKPSP------STW 93 7***********************************99944444557899************99887775......68 PP trihelix 80 pyfdqle 86 p++++l+ Pav_sc0000143.1_g260.1.mk 94 PFYHRLH 100 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MHRPTRTRAP GGRDDCWSEG ATSTLITAWG DRYLQLNRGN LRQNDWKEVA DAVNSGLNGG 60 VKASKTDVQC KNRIDTLKKK YKLEKSKPSP STWPFYHRLH SLIGSSPDSA VSTKRKPSIP 120 TLTVKSPDLK PKPPGGSTES SIGCEDGEDC NDDGVRKRRM EAVGLSGGAA CRELADFQAS 180 QTCLGASKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.2	6e-34	Trihelix family protein