PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000138.1_g790.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 549aa MW: 60176 Da PI: 7.993

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000138.1_g790.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76	3.9e-24	147	189	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 +epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Pav_sc0000138.1_g790.1.mk 147 PEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 189 89***************************************98 PP
2	QLQ	57.1	5.4e-20	99	134	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+++yKy++a++PvP +Ll++i++ Pav_sc0000138.1_g790.1.mk 99 PFTNTQWKELERQAMIYKYMVASLPVPRDLLFPITR 134 8********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MMMMVHHDNH RRPFSSSERG EADGPTCNRP PVTDNYPNNN SVYDVVVAAA AGSSSSGGQV 60 LRGLQPFDIS NRTTNTCISA HHTAFRSPAG GMTTSLGFPF TNTQWKELER QAMIYKYMVA 120 SLPVPRDLLF PITRAPSGPT ISQSPYPEPG RCKRTDGKKW RCSRDVAPDQ KYCERHMHRG 180 RPRSRKHVEV HANTTTKRVR HDINQAHPTM SPATASISNT TSINKNVCQT QFIGSNLQPY 240 HQSPMFLDRD TVKAATFDSM NSASSDREHR FGLDWTRGKE KKRRSLNWLM MKGEPVQMAT 300 SDPQWQHLMQ SKTELNSKIP FFDANSSIFT QRSEEECFLN LNSYTNFNAG GEDQPDNECN 360 MFLNPDVVSL DNPLLEETPR CFIDAWSKTV IDEDTMANSV NNKDNSSAPS SGQLSPSSLT 420 LSMGGYNSIN EEMGQTQMSL GNNGNDMKPG LSTWLSPASW VASAPGGPLA EVLKPTTSAA 480 SNPSSPITAV TANGELGSPL ATTVSSPSGV LQKTFASLSD SSGNSSPTLA SSRAKQPEIV 540 SLWLNQNKA

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MMMMVHHDNH RRPFSSSERG EADGPTCNRP PVTDNYPNNN SVYDVVVAAA AGSSSSGGQV  60
LRGLQPFDIS NRTTNTCISA HHTAFRSPAG GMTTSLGFPF TNTQWKELER QAMIYKYMVA  120
SLPVPRDLLF PITRAPSGPT ISQSPYPEPG RCKRTDGKKW RCSRDVAPDQ KYCERHMHRG  180
RPRSRKHVEV HANTTTKRVR HDINQAHPTM SPATASISNT TSINKNVCQT QFIGSNLQPY  240
HQSPMFLDRD TVKAATFDSM NSASSDREHR FGLDWTRGKE KKRRSLNWLM MKGEPVQMAT  300
SDPQWQHLMQ SKTELNSKIP FFDANSSIFT QRSEEECFLN LNSYTNFNAG GEDQPDNECN  360
MFLNPDVVSL DNPLLEETPR CFIDAWSKTV IDEDTMANSV NNKDNSSAPS SGQLSPSSLT  420
LSMGGYNSIN EEMGQTQMSL GNNGNDMKPG LSTWLSPASW VASAPGGPLA EVLKPTTSAA  480
SNPSSPITAV TANGELGSPL ATTVSSPSGV LQKTFASLSD SSGNSSPTLA SSRAKQPEIV  540
SLWLNQNKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-35	GRF family protein