PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000131.1_g850.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 343aa MW: 38307.8 Da PI: 5.4581

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000131.1_g850.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	1.9e-09	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H Pav_sc0000131.1_g850.1.mk 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36 58*****************************55 PP
2	zf-B_box	27.9	4.7e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C +H+ H++vp+ Pav_sc0000131.1_g850.1.mk 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP
3	CCT	69.9	6.6e-24	282	325	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Pav_sc0000131.1_g850.1.mk 282 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 325 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSENS AANSVPVVKS VVNFLDDRYF 120 SDVEGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL 180 EDTQEQNSCG TDGVVPVQSK NVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS 240 MDVSVVPDGN TTMTDVCDPY TKSMSSPVES THQAVQISST DREARVLRYR EKRKNRKFEK 300 TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRYGVV PSF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSENS AANSVPVVKS VVNFLDDRYF  120
SDVEGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL  180
EDTQEQNSCG TDGVVPVQSK NVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS  240
MDVSVVPDGN TTMTDVCDPY TKSMSSPVES THQAVQISST DREARVLRYR EKRKNRKFEK  300
TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRYGVV PSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-140	CO-like family protein