PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000129.1_g1860.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 396aa MW: 42917.7 Da PI: 4.5309

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000129.1_g1860.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.6e-11	208	253	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++L + +eY+k Lq Pav_sc0000129.1_g1860.1.mk 208 HSIAERLRREKIAERMKNLQELVPNS-----NRTDKASMLDEIIEYVKFLQ 253 99*********************7.....59***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MDNYLNQFFS SSSWSDVDVK ERSSWGCCES GQPNEMLLNS AGVDEDDNNS SPTYLTNSNH 60 SMESLAAQDA SSVVHDLEPD EQDDDFETLS SISQLWPLQS YEGVPSSFSP GMGQHRMCSF 120 GFKGEYGDNG TYAMPNDPNN LAALVTSEGK QDLQNYPLPS FASRPQITMA MSGLQSLPQA 180 TSTTPSAECT GTGKPRMRAR RGQATDPHSI AERLRREKIA ERMKNLQELV PNSNRTDKAS 240 MLDEIIEYVK FLQLQIKVLS MSRVGAAGAV VPLITDTQQA KGANGSSLLP SVGQVTDISF 300 NEIALEQVVR LMESDVTKAM QHLQSKGLCL MPIALADAIS TEKKSSSSPA PTSDDWKKTG 360 FNDSGLVQNN SSSSSSSSLP EVHSYPLVVC CGKSLQ

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MDNYLNQFFS SSSWSDVDVK ERSSWGCCES GQPNEMLLNS AGVDEDDNNS SPTYLTNSNH  60
SMESLAAQDA SSVVHDLEPD EQDDDFETLS SISQLWPLQS YEGVPSSFSP GMGQHRMCSF  120
GFKGEYGDNG TYAMPNDPNN LAALVTSEGK QDLQNYPLPS FASRPQITMA MSGLQSLPQA  180
TSTTPSAECT GTGKPRMRAR RGQATDPHSI AERLRREKIA ERMKNLQELV PNSNRTDKAS  240
MLDEIIEYVK FLQLQIKVLS MSRVGAAGAV VPLITDTQQA KGANGSSLLP SVGQVTDISF  300
NEIALEQVVR LMESDVTKAM QHLQSKGLCL MPIALADAIS TEKKSSSSPA PTSDDWKKTG  360
FNDSGLVQNN SSSSSSSSLP EVHSYPLVVC CGKSLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-59	bHLH family protein